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MacroAPE 1083:15-AGRMAACCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;560.31;2.28;3.42;3.99!2;0.57;66.69;501.03;1.71!3;216.03;68.97;227.43;58.14!4;231.99;270.18;0.57;67.26!5;507.3;0.57;51.3;10.83!6;505.02;0.57;...")
 
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5365!10717-109I6;0.378802!10455-106G5;0.980091!10534-107G3;0.764501!10429-106D6;0.79388!10464-106H5;0.522551!10827-111C8;0.507999!10789-110H6;0.692162!10828-111C9;0.290207!10788-110H5;0.0343099!10792-110H9;0.687796!10765-110E9;0.257087!10829-111D1;0.960477!10830-111D2;0.765886!10831-111D3;0.798609!10832-111D4;0.487207!10833-111D5;0.719317!10764-110E8;0.992642!10770-110F5;0.670127!10399-106A3;0.976949!10400-106A4;0.483784!10405-106A9;0.568056!10834-111D6;0.2955!10835-111D7;0.600972!10836-111D8;0.558803!10837-111D9;0.859186!10699-109G6;0.273605!10802-111A1;0.278715!10796-110I4;0.73121!10010-101C1;0.0810293!10810-111A9;0.893628!10421-106C7;0.425999!10708-109H6;0.17163!12235-129G3;0.693282!12236-129G4;0.0921024!12237-129G5;0.00283533!10167-103B5;0.135155!10151-102I7;0.667061!10428-106D5;0.975546!10795-110I3;0.331923!10805-111A4;0.653859!10052-101G7;0.311381!10189-103D9;0.687026!10589-108D4;0.631978!10425-106D2;0.899474!10427-106D4;0.109471!10702-109G9;0.495546!10432-106D9;0.194796!10496-107C1;0.806498!10718-109I7;0.267517!10011-101C2;0.594999!10053-101G8;0.728585!10686-109F2;0.00315377!10084-102B3;0.587328!10012-101C3;0.466003!10085-102B4;0.683976!10482-107A5;0.786978!10419-106C5;0.107799!10080-102A8;0.494399!10760-110E4;0.811086!10709-109H7;0.582159!10710-109H8;0.454726!10703-109H1;0.103886!10719-109I8;0.462227!10642-109A3;0.270321!10177-103C6;0.423274!10164-103B2;0.6243!10173-103C2;0.997393!10166-103B4;0.153199!10083-102B2;0.356011!10188-103D8;0.124582!10552-107I3;0.407927!10553-107I4;0.0251172!10013-101C4;0.460741!10536-107G5;0.974629!10618-108G6;0.311149!10423-106C9;0.749091!10785-110H2;0.0789018!12238-129G6;0.0576184!12239-129G7;0.192489!12240-129G8;0.0560836!10416-106C2;0.224322!10801-110I9;0.674422!10766-110F1;0.499522!10824-111C5;0.889421!10825-111C6;0.927221!10826-111C7;0.946799!10454-106G4;0.699561!10409-106B4;0.863753!10638-108I8;0.655221!10636-108I6;0.695771!10513-107D9;0.575312!10420-106C6;0.380982!10082-102B1;0.209179!10014-101C5;0.568749!10070-101I7;0.667014!10452-106G2;0.711066!10453-106G3;0.549725!10449-106F8;0.733455!10042-101F6;0.644753!10069-101I6;0.997692!10193-103E4;0.61543!10631-108I1;0.587508!10438-106E6;0.914869!10488-107B2;0.468791!10196-103E7;0.136889!10071-101I8;0.508872!10071-101I8;0.873069!10041-101F5;0.954494!10451-106G1;0.811122!10450-106F9;0.415913!10604-108F1;0.332041!10605-108F2;0.422034!10606-108F3;0.834892!10603-108E9;0.21112!10497-107C2;0.132879!10448-106F7;0.236249!10643-109A4;0.663162!10426-106D3;0.350377!10431-106D8;0.944714!10197-103E8;0.590865!10443-106F2;0.567279!10815-111B5;0.124553!10816-111B6;0.0852355!10817-111B7;0.131839!10015-101C6;0.111148!10410-106B5;0.314103!10054-101G9;0.0454841!10758-110E2;0.374215!10711-109H9;0.515517!10040-101F4;0.300139!10470-106I2;0.692003!10415-106C1;0.89739!10198-103E9;0.331191!10614-108G2;0.492603!10612-108F9;0.448798!10549-107H9;0.0779818!10615-108G3;0.478641!10487-107B1;0.62955!10433-106E1;0.266055!10688-109F4;0.643418!10444-106F3;0.162862!10444-106F3;0.810963!10485-107A8;0.759387!10413-106B8;0.999856!10175-103C4;0.338736!10161-103A8;0.92221!12131-128D7;0.848313!10624-108H3;0.235919!10712-109I1;0.777808!10205-103F7;0.0837201!10206-103F8;0.768225!10207-103F9;0.584109!10050-101G5;0.794654!10051-101G6;0.328106!10016-101C7;0.256527!10046-101G1;0.552271!10778-110G4;0.908649!10633-108I3;0.280591!10818-111B8;0.46064!10819-111B9;0.0180949!10820-111C1;0.00962694!10484-107A7;0.0204936!10808-111A7;0.30358!10169-103B7;0.633098!10153-102I9;0.796081!13425-144D5;0.930883!13433-144E4;0.0854801!13437-144E8;0.0745176!11904-125F5;0.0699212!11905-125F6;0.701596!10039-101F3;0.93373!10791-110H8;0.692062!10017-101C8;0.0733984!10045-101F9;0.991102!10509-107D5;0.744659!10839-111E2;0.738768!10692-109F8;0.0424904!10079-102A7;0.894224!10078-102A6;0.676727!10721-110A1;0.458145!10569-108B2;0.59277!10570-108B3;0.186271!10571-108B4;0.579423!10647-109A8;0.303078!10752-110D5;0.853293!10782-110G8;0.49381!10726-110A6;0.302803!10018-101C9;0.0644159!10086-102B5;0.227342!10182-103D2;0.360915!10165-103B3;0.8996!10499-107C4;0.959948!10408-106B3;0.805695!10019-101D1;0.954439!10068-101I5;0.263708!10075-102A3;0.0974337!10077-102A5;0.148889!10727-110A7;0.0862176!10775-110G1;0.7076!10412-106B7;0.225833!12231-129F8;0.906895!12232-129F9;0.812716!12233-129G1;0.282211!12234-129G2;0.587093!10414-106B9;0.804531!10170-103B8;0.832797!10183-103D3;0.460637!10150-102I6;0.583369!10174-103C3;0.837584!10155-103A2;0.764943!10038-101F2;0.943121!10838-111E1;0.8969!10759-110E3;0.516671!10514-107E1;0.603548!10465-106H6;0.864325!10691-109F7;0.126379!10843-111E6;0.950582!10844-111E7;0.251455!11747-123G1;0.555703!11748-123G2;0.231664!11749-123G3;0.677952!11750-123G4;0.940708!11751-123G5;0.413116!11840-124H4;0.522367!11752-123G6;0.29311!11753-123G7;0.856978!11754-123G8;0.818452!11755-123G9;0.784486!11756-123H1;0.411921!11833-124G6;0.0318734!11760-123H5;0.0660292!11836-124G9;0.00649386!11758-123H3;0.756038!11835-124G8;0.59741!11762-123H7;0.712858!11838-124H2;0.0719101!11757-123H2;0.289011!11759-123H4;0.125933!11761-123H6;0.596516!11842-124H6;0.0796075!11837-124H1;0.477036!10568-108B1;0.694818!13230-141I8;0.369515!13231-141I9;0.0267092!10696-109G3;0.0339197!10493-107B7;0.365794!10494-107B8;0.108732!10850-111F4;0.999847!10851-111F5;0.141985!10852-111F6;0.640746!10853-111F7;0.466571!10854-111F8;0.353735!10855-111F9;0.379889!10856-111G1;0.0851027!10847-111F1;0.426396!10846-111E9;0.0400852!10848-111F2;0.997136!10845-111E8;0.669414!10857-111G2;0.480424!10858-111G3;0.012489!10156-103A3;0.209804!11901-125F2;0.835303!11902-125F3;0.657345!11903-125F4;0.235195!10689-109F5;0.502524!10648-109A9;0.451511!10784-110H1;0.875787!10744-110C6;0.827954!10772-110F7;0.413697!10474-106I6;0.614269!10600-108E6;0.575145!10684-109E9;0.235325!12226-129F3;0.476446!12227-129F4;0.37163!10508-107D4;0.854966!10539-107G8;0.522622!10607-108F4;0.407366!10555-107I6;0.107115!10774-110F9;0.360395!10637-108I7;0.0780943!10663-109C6;0.214422!10728-110A8;0.191262!10729-110A9;0.157159!10430-106D7;0.924973!10730-110B1;0.576573!10813-111B3;0.971015!10812-111B2;0.0485871!10037-101F1;0.0708514!10172-103C1;0.779959!10163-103B1;0.437973!10076-102A4;0.928683!10073-102A1;0.496459!10036-101E9;0.850896!10195-103E6;0.511221!10277-104E7;0.570465!10434-106E2;0.803766!10550-107I1;0.147691!10545-107H5;0.0683837!10544-107H4;0.359949!10704-109H2;0.112982!10510-107D6;0.946969!10558-107I9;0.242709!10020-101D2;0.0300832!10732-110B3;0.65606!10049-101G4;0.542174!10698-109G5;0.0340577!10437-106E5;0.102004!10417-106C3;0.0658035!10035-101E8;0.843839!10171-103B9;0.654681!10157-103A4;0.627538!10034-101E7;0.778432!10072-101I9;0.644208!10199-103F1;0.996062!10200-103F2;0.177778!10697-109G4;0.404936!10723-110A3;0.0670052!10179-103C8;0.350765!10160-103A7;0.646816!10180-103C9;0.876322!10162-103A9;0.859879!10021-101D3;0.432636!10840-111E3;0.882851!10706-109H4;0.905666!10033-101E6;0.140659!10032-101E5;0.974227!10490-107B4;0.499575!10439-106E7;0.849506!10022-101D4;0.346367!10176-103C5;0.747703!10469-106I1;0.783256!10067-101I4;0.251655!10411-106B6;0.973485!10471-106I3;0.813359!10030-101E3;0.732808!10475-106I7;0.834683!10787-110H4;0.612692!10477-106I9;0.654533!10695-109G2;0.389738!11771-123I7;0.179431!11772-123I8;0.88051!11773-123I9;0.118064!10093-102C3;0.476912!10442-106F1;0.228989!10442-106F1;0.671894!10201-103F3;0.315235!10639-108I9;0.185624!11843-124H7;0.442409!11841-124H5;0.96317!10693-109F9;0.602952!10436-106E4;0.0189754!10483-107A6;0.240266!10282-104F3;0.102212!10023-101D5;0.0246045!10066-101I3;0.0788463!10065-101I2;0.313313!10800-110I8;0.753078!10610-108F7;0.966928!10841-111E4;0.230185!10541-107H1;0.416162!10842-111E5;0.324711!10562-108A4;0.264188!10024-101D6;0.450163!10064-101I1;0.686296!10609-108F6;0.605925!10048-101G3;0.54777!10781-110G7;0.360864!10181-103D1;0.888849!10159-103A6;0.769085!10056-101H2;0.66331!10737-110B8;0.776353!10025-101D7;0.871469!10044-101F8;0.153073!10424-106D1;0.126281!10463-106H4;0.675718!10616-108G4;0.353093!10486-107A9;0.407764!10062-101H8;0.669805!10202-103F4;0.483452!10158-103A5;0.442123!10441-106E9;0.711309!10031-101E4;0.197405!10063-101H9;0.620967!10063-101H9;0.945361!11763-123H8;0.837368!11765-123I1;0.299732!11768-123I4;0.499352!10807-111A6;0.302977!10790-110H7;0.58966!10798-110I6;0.409293!10786-110H3;0.245757!10591-108D6;0.222424!10593-108D8;0.370061!10590-108D5;0.435149!10026-101D8;0.419473!10096-102C6;0.598008!10168-103B6;0.844222!10154-103A1;0.773451!10209-103G2;0.957958!10061-101H7;0.485685!10027-101D9;0.791697!10043-101F7;0.00402784!10783-110G9;0.0242182!10028-101E1;0.357512!10060-101H6;0.440248!10203-103F5;0.824857!10059-101H5;0.301383!10047-101G2;0.207334!10029-101E2;0.859316!10058-101H4;0.652205!10418-106C4;0.666994!10492-107B6;0.524178!10694-109G1;0.811837!10797-110I5;0.42976!10057-101H3;0.486106!10100-102D1;0.767062!10055-101H1;0.732228!10204-103F6;0.675841!10191-103E2;0.917578!10563-108A5;0.614599
|name=15-AGRMAACCG,CNhs11998,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.712534743949132),T:570.0(15.21%),B:4013.1(9.26%),P:1e-30
|name=15-AGRMAACCG,CNhs11998,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.712534743949132),T:570.0(15.21%),B:4013.1(9.26%),P:1e-30
|tomtom_result=Gamyb#MA0034.1;-1;0.000223638;0.106452;0.212903;8;AGGCAACCG;GACAACCGCC;+!BRCA1#MA0133.1;-2;0.0039616;1.88572;1;7;AGGCAACCG;ACAACAC;+!THI2#MA0407.1;-1;0.00682703;3.24967;1;8;AGGCAACCG;GGAAACTCTAAGAAC;+!Myb#MA0100.1;-3;0.00728158;3.46603;1;6;AGGCAACCG;CAACGGCC;-!run::Bgb#MA0242.1;-3;0.0101209;4.81756;1;6;AGGCAACCG;TAACCGCAA;+!RFX1#MA0365.1;0;0.0180018;8.56885;1;8;AGGCAACCG;TGGCAACC;-!Myf#MA0055.1;0;0.0181707;8.64927;1;9;AGGCAACCG;CAGCAGCTGCTG;+
}}
}}

Latest revision as of 14:49, 7 September 2012

Full Name: 15-AGRMAACCG,CNhs11998,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.712534743949132),T:570.0(15.21%),B:4013.1(9.26%),P:1e-30

Motif matrix
POACGT
1560.312.283.423.99
20.5766.69501.031.71
3216.0368.97227.4358.14
4231.99270.180.5767.26
5507.30.5751.310.83
6505.020.5761.562.85
70.57525.540.5743.32
835.91437.1961.5635.34
99.1249.02509.012.85

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Gamyb#MA0034.1-10.0002236380.1064520.2129038AGGCAACCGGACAACCGCC+
BRCA1#MA0133.1-20.00396161.8857217AGGCAACCGACAACAC+
THI2#MA0407.1-10.006827033.2496718AGGCAACCGGGAAACTCTAAGAAC+
Myb#MA0100.1-30.007281583.4660316AGGCAACCGCAACGGCC-
run::Bgb#MA0242.1-30.01012094.8175616AGGCAACCGTAACCGCAA+
RFX1#MA0365.100.01800188.5688518AGGCAACCGTGGCAACC-
Myf#MA0055.100.01817078.6492719AGGCAACCGCAGCAGCTGCTG+
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