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MacroAPE 1083:6-AGTTCTGTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;146.234;20.808;71.383;50.575!2;48.841;76.007;139.009;25.143!3;47.107;21.675;28.322;191.896!4;2.601;18.785;1.156;266.458!5;35.836;155.771;51....")
 
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-111C8;0.369177!10789-110H6;0.00886804!10828-111C9;0.219716!10788-110H5;0.71171!10792-110H9;0.0149537!10765-110E9;0.374335!10829-111D1;0.0197908!10830-111D2;0.00201192!10831-111D3;0.82809!10832-111D4;0.198589!10833-111D5;0.0244019!10764-110E8;0.0131055!10770-110F5;0.151723!10399-106A3;0.0236066!10400-106A4;0.0416579!10405-106A9;0.0427484!10834-111D6;0.0441085!10835-111D7;0.0188851!10836-111D8;0.691395!10837-111D9;0.565709!10699-109G6;0.673989!10802-111A1;0.520112!10796-110I4;0.899486!10010-101C1;0.34418!10810-111A9;0.428849!10421-106C7;0.368864!10708-109H6;0.398032!12235-129G3;0.680166!12236-129G4;0.94447!12237-129G5;0.540406!10167-103B5;0.981068!10151-102I7;0.0358632!10428-106D5;0.019464!10795-110I3;0.577675!10805-111A4;0.212989!10052-101G7;0.140884!10189-103D9;0.333078!10589-108D4;0.0326676!10425-106D2;0.0267375!10427-106D4;0.860979!10702-109G9;0.13266!10432-106D9;0.344974!10496-107C1;0.482566!10718-109I7;0.571242!10011-101C2;0.112735!10053-101G8;0.298894!10686-109F2;0.0905428!10084-102B3;0.323871!10012-101C3;0.011457!10085-102B4;0.0528696!10482-107A5;0.0221868!10419-106C5;0.236608!10080-102A8;0.776552!10760-110E4;0.246456!10709-109H7;0.433882!10710-109H8;0.140481!10703-109H1;0.354364!10719-109I8;0.349257!10642-109A3;0.386942!10177-103C6;0.0531368!10164-103B2;0.0101922!10173-103C2;0.0204302!10166-103B4;0.020725!10083-102B2;0.00825024!10188-103D8;0.0101759!10552-107I3;0.0286194!10553-107I4;0.896437!10013-101C4;0.123995!10536-107G5;0.163234!10618-108G6;0.768835!10423-106C9;0.836864!10785-110H2;0.66543!12238-129G6;0.643333!12239-129G7;0.501738!12240-129G8;0.17585!10416-106C2;0.180783!10801-110I9;0.0426809!10766-110F1;0.0360883!10824-111C5;0.676226!10825-111C6;0.768505!10826-111C7;0.601952!10454-106G4;0.539011!10409-106B4;0.378681!10638-108I8;0.884807!10636-108I6;0.785244!10513-107D9;0.77234!10420-106C6;0.528272!10082-102B1;0.322215!10014-101C5;0.000405946!10070-101I7;0.0433292!10452-106G2;0.0086995!10453-106G3;0.421932!10449-106F8;0.705433!10042-101F6;0.665996!10069-101I6;0.0241161!10193-103E4;0.575349!10631-108I1;0.042199!10438-106E6;0.0364302!10488-107B2;0.477633!10196-103E7;0.744673!10071-101I8;0.0574789!10071-101I8;0.00317132!10041-101F5;0.0111042!10451-106G1;0.634963!10450-106F9;0.0195947!10604-108F1;0.143759!10605-108F2;0.0816265!10606-108F3;0.379241!10603-108E9;0.0967586!10497-107C2;0.0608841!10448-106F7;0.598018!10643-109A4;0.735524!10426-106D3;0.650726!10431-106D8;0.570185!10197-103E8;0.575426!10443-106F2;0.331124!10815-111B5;0.205137!10816-111B6;0.728892!10817-111B7;0.712047!10015-101C6;0.847802!10410-106B5;0.697911!10054-101G9;0.00873789!10758-110E2;0.121551!10711-109H9;0.29451!10040-101F4;0.6113!10470-106I2;0.0182818!10415-106C1;0.260772!10198-103E9;0.516108!10614-108G2;0.0437592!10612-108F9;0.826212!10549-107H9;0.0626884!10615-108G3;0.774316!10487-107B1;0.0476252!10433-106E1;0.138657!10688-109F4;0.0550093!10444-106F3;0.537621!10444-106F3;0.527825!10485-107A8;0.648934!10413-106B8;0.627833!10175-103C4;0.898901!10161-103A8;0.012846!12131-128D7;0.0612644!10624-108H3;0.888606!10712-109I1;0.77652!10205-103F7;0.850944!10206-103F8;0.693437!10207-103F9;0.542031!10050-101G5;0.138534!10051-101G6;0.435404!10016-101C7;0.876346!10046-101G1;0.981234!10778-110G4;0.426727!10633-108I3;0.443492!10818-111B8;0.0265374!10819-111B9;0.576492!10820-111C1;0.489332!10484-107A7;0.628105!10808-111A7;0.0374206!10169-103B7;0.0652282!10153-102I9;0.0210001!13425-144D5;0.0171826!13433-144E4;0.480426!13437-144E8;0.386984!11904-125F5;0.783675!11905-125F6;0.277534!10039-101F3;0.329996!10791-110H8;0.0240272!10017-101C8;0.504383!10045-101F9;0.658582!10509-107D5;0.00313036!10839-111E2;0.165491!10692-109F8;0.0899553!10079-102A7;0.271925!10078-102A6;0.777615!10721-110A1;0.575195!10569-108B2;0.772557!10570-108B3;0.0373482!10571-108B4;0.0073679!10647-109A8;0.0144404!10752-110D5;0.111934!10782-110G8;0.656847!10726-110A6;0.95829!10018-101C9;0.853344!10086-102B5;0.491981!10182-103D2;0.567354!10165-103B3;0.0126543!10499-107C4;0.0322051!10408-106B3;0.210288!10019-101D1;0.0863316!10068-101I5;0.876147!10075-102A3;0.119954!10077-102A5;0.943074!10727-110A7;0.0870477!10775-110G1;0.070301!10412-106B7;0.044755!12231-129F8;0.417922!12232-129F9;0.763236!12233-129G1;0.993387!12234-129G2;0.987611!10414-106B9;0.963368!10170-103B8;0.530746!10183-103D3;0.0182047!10150-102I6;0.0447239!10174-103C3;0.0278073!10155-103A2;0.0563221!10038-101F2;0.0327991!10838-111E1;0.0285524!10759-110E3;0.00525072!10514-107E1;0.640337!10465-106H6;0.544164!10691-109F7;0.722554!10843-111E6;0.700303!10844-111E7;0.262628!11747-123G1;0.0273487!11748-123G2;0.150549!11749-123G3;0.126895!11750-123G4;0.122716!11751-123G5;0.547119!11840-124H4;0.349633!11752-123G6;0.396116!11753-123G7;0.0822437!11754-123G8;0.388923!11755-123G9;0.802343!11756-123H1;0.655789!11833-124G6;0.222959!11760-123H5;0.754395!11836-124G9;0.512619!11758-123H3;0.2524!11835-124G8;0.178383!11762-123H7;0.808933!11838-124H2;0.876001!11757-123H2;0.0663427!11759-123H4;0.129814!11761-123H6;0.460131!11842-124H6;0.31832!11837-124H1;0.80825!10568-108B1;0.48378!13230-141I8;0.819145!13231-141I9;0.346964!10696-109G3;0.356822!10493-107B7;0.039058!10494-107B8;0.510424!10850-111F4;0.873278!10851-111F5;0.316824!10852-111F6;0.387171!10853-111F7;0.147024!10854-111F8;0.91157!10855-111F9;0.671331!10856-111G1;0.259433!10847-111F1;0.94559!10846-111E9;0.801582!10848-111F2;0.239653!10845-111E8;0.419144!10857-111G2;0.482372!10858-111G3;0.81246!10156-103A3;0.760018!11901-125F2;0.0224335!11902-125F3;0.0163103!11903-125F4;0.0131676!10689-109F5;0.0143357!10648-109A9;0.454744!10784-110H1;0.24888!10744-110C6;0.148927!10772-110F7;0.469274!10474-106I6;0.0166457!10600-108E6;0.044385!10684-109E9;0.670234!12226-129F3;0.852304!12227-129F4;0.802329!10508-107D4;0.0968129!10539-107G8;0.0724483!10607-108F4;0.11702!10555-107I6;0.112821!10774-110F9;0.0231508!10637-108I7;0.265621!10663-109C6;0.0780802!10728-110A8;0.0465701!10729-110A9;0.196882!10430-106D7;0.624324!10730-110B1;0.915786!10813-111B3;0.0332727!10812-111B2;0.392778!10037-101F1;0.000549145!10172-103C1;0.0192152!10163-103B1;0.0300544!10076-102A4;0.0299488!10073-102A1;0.0194163!10036-101E9;0.0105705!10195-103E6;0.0210623!10277-104E7;0.0165537!10434-106E2;0.00877785!10550-107I1;0.828473!10545-107H5;0.401775!10544-107H4;0.653483!10704-109H2;0.741876!10510-107D6;0.733694!10558-107I9;0.364936!10020-101D2;0.364119!10732-110B3;0.244467!10049-101G4;0.948473!10698-109G5;0.163611!10437-106E5;0.947536!10417-106C3;0.972085!10035-101E8;0.00856432!10171-103B9;0.0245203!10157-103A4;0.0529113!10034-101E7;0.0222939!10072-101I9;0.0252086!10199-103F1;0.00304948!10200-103F2;0.282187!10697-109G4;0.63263!10723-110A3;0.0924979!10179-103C8;0.552952!10160-103A7;0.119708!10180-103C9;0.138849!10162-103A9;0.0254794!10021-101D3;0.0104178!10840-111E3;0.418262!10706-109H4;0.142301!10033-101E6;0.146756!10032-101E5;0.0510355!10490-107B4;0.0459308!10439-106E7;0.575664!10022-101D4;0.339973!10176-103C5;0.065799!10469-106I1;0.00703897!10067-101I4;0.0758945!10411-106B6;0.00329233!10471-106I3;0.753872!10030-101E3;0.312451!10475-106I7;0.0605128!10787-110H4;0.00731081!10477-106I9;0.0991654!10695-109G2;0.373631!11771-123I7;0.874638!11772-123I8;0.155301!11773-123I9;0.0919151!10093-102C3;0.0149696!10442-106F1;0.224816!10442-106F1;0.55659!10201-103F3;0.549119!10639-108I9;0.0489194!11843-124H7;0.931204!11841-124H5;0.861209!10693-109F9;0.0781922!10436-106E4;0.848117!10483-107A6;0.443451!10282-104F3;0.505582!10023-101D5;0.889909!10066-101I3;0.976992!10065-101I2;0.841125!10800-110I8;0.488508!10610-108F7;0.0759596!10841-111E4;0.0514153!10541-107H1;0.186073!10842-111E5;0.418531!10562-108A4;0.0449509!10024-101D6;0.0138437!10064-101I1;0.14377!10609-108F6;0.0172769!10048-101G3;0.929191!10781-110G7;0.271727!10181-103D1;0.0769624!10159-103A6;0.0387247!10056-101H2;0.0775277!10737-110B8;0.013054!10025-101D7;0.573942!10044-101F8;0.120476!10424-106D1;0.857394!10463-106H4;0.0480934!10616-108G4;0.471775!10486-107A9;0.803958!10062-101H8;0.949083!10202-103F4;0.00203241!10158-103A5;0.733843!10441-106E9;0.119604!10031-101E4;0.0290551!10063-101H9;0.0226553!10063-101H9;0.0102408!11763-123H8;0.00746069!11765-123I1;0.254685!11768-123I4;0.660116!10807-111A6;0.0870755!10790-110H7;0.20722!10798-110I6;0.849146!10786-110H3;0.267677!10591-108D6;0.845979!10593-108D8;0.88765!10590-108D5;0.727158!10026-101D8;0.701115!10096-102C6;0.0664295!10168-103B6;0.00168009!10154-103A1;0.0302334!10209-103G2;0.0309113!10061-101H7;0.91483!10027-101D9;0.304261!10043-101F7;0.546374!10783-110G9;0.973546!10028-101E1;0.731923!10060-101H6;0.301965!10203-103F5;0.006404!10059-101H5;0.944003!10047-101G2;0.611277!10029-101E2;0.737726!10058-101H4;0.189451!10418-106C4;0.282678!10492-107B6;0.359508!10694-109G1;0.299037!10797-110I5;0.421563!10057-101H3;0.251068!10100-102D1;0.794447!10055-101H1;0.0919818!10204-103F6;0.0868663!10191-103E2;0.228587!10563-108A5;0.303439
|name=6-AGTTCTGTTTT,CNhs13468,BestGuess:SPIB_f1_HM09(0.677297976521518),T:289.0(10.00%),B:2169.0(4.66%),P:1e-32
|name=6-AGTTCTGTTTT,CNhs13468,BestGuess:SPIB_f1_HM09(0.677297976521518),T:289.0(10.00%),B:2169.0(4.66%),P:1e-32
|tomtom_result=STAT1#MA0137.1;1;0.00399898;1.90351;1;11;AGTTCTGTTTT;CAGTTTCATTTTCC;-!HMG-1#MA0044.1;-1;0.00702569;3.34423;1;9;AGTTCTGTTTT;GTTGTACTC;+!IRF1#MA0050.1;0;0.008119;3.86464;1;11;AGTTCTGTTTT;GGTTTCACTTTC;-!PEND#MA0127.1;0;0.00850021;4.0461;1;10;AGTTCTGTTTT;ACTTCTTATT;+!HMG-I/Y#MA0045.1;0;0.0101924;4.85158;1;11;AGTTCTGTTTT;GTTTTTCCATTTGTTG;-!AZF1#MA0277.1;-1;0.0111076;5.28722;1;9;AGTTCTGTTTT;TTTCTTTTT;-!br_Z2#MA0011.1;-2;0.0112828;5.37062;1;8;AGTTCTGTTTT;TACTATTT;+!MGA1#MA0336.1;7;0.0123612;5.88394;1;11;AGTTCTGTTTT;TTTAGAGTGTTCTATAGTCCT;-!squamosa#MA0082.1;0;0.0133255;6.34296;1;11;AGTTCTGTTTT;ATTTCCATTTTTGG;-!id1#MA0120.1;-2;0.014408;6.85822;1;9;AGTTCTGTTTT;TTTTCCTTTTCG;+!GAT3#MA0301.1;0;0.0162651;7.74219;1;9;AGTTCTGTTTT;AGATCTACA;+!GAL4#MA0299.1;1;0.0165127;7.86007;1;11;AGTTCTGTTTT;GAGTACTGTTCCCCG;-!IRF2#MA0051.1;-1;0.0186231;8.86461;1;10;AGTTCTGTTTT;GTTTTGCTTTCACTTTCC;-!SFL1#MA0377.1;7;0.0189216;9.00666;1;11;AGTTCTGTTTT;TTTTATTTCTTCTATTCTCTA;-!SUT2#MA0400.1;10;0.0203251;9.67474;1;10;AGTTCTGTTTT;AAATTTTCGGAGTTTATCAT;-!br_Z1#MA0010.1;1;0.0209201;9.95796;1;11;AGTTCTGTTTT;GATTTGTCTATTAC;-
}}
}}

Latest revision as of 14:49, 7 September 2012

Full Name: 6-AGTTCTGTTTT,CNhs13468,BestGuess:SPIB_f1_HM09(0.677297976521518),T:289.0(10.00%),B:2169.0(4.66%),P:1e-32

Motif matrix
POACGT
1146.23420.80871.38350.575
248.84176.007139.00925.143
347.10721.67528.322191.896
42.60118.7851.156266.458
535.836155.77151.44245.951
613.87275.7180.578198.832
752.30948.263165.88622.542
832.946102.3065.491148.257
985.83349.4191.734152.014
1017.0519.53768.493193.919
1114.73961.55770.227142.477

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STAT1#MA0137.110.003998981.90351111AGTTCTGTTTTCAGTTTCATTTTCC-
HMG-1#MA0044.1-10.007025693.3442319AGTTCTGTTTTGTTGTACTC+
IRF1#MA0050.100.0081193.86464111AGTTCTGTTTTGGTTTCACTTTC-
PEND#MA0127.100.008500214.0461110AGTTCTGTTTTACTTCTTATT+
HMG-I/Y#MA0045.100.01019244.85158111AGTTCTGTTTTGTTTTTCCATTTGTTG-
AZF1#MA0277.1-10.01110765.2872219AGTTCTGTTTTTTTCTTTTT-
br_Z2#MA0011.1-20.01128285.3706218AGTTCTGTTTTTACTATTT+
MGA1#MA0336.170.01236125.88394111AGTTCTGTTTTTTTAGAGTGTTCTATAGTCCT-
squamosa#MA0082.100.01332556.34296111AGTTCTGTTTTATTTCCATTTTTGG-
id1#MA0120.1-20.0144086.8582219AGTTCTGTTTTTTTTCCTTTTCG+
GAT3#MA0301.100.01626517.7421919AGTTCTGTTTTAGATCTACA+
GAL4#MA0299.110.01651277.86007111AGTTCTGTTTTGAGTACTGTTCCCCG-
IRF2#MA0051.1-10.01862318.86461110AGTTCTGTTTTGTTTTGCTTTCACTTTCC-
SFL1#MA0377.170.01892169.00666111AGTTCTGTTTTTTTTATTTCTTCTATTCTCTA-
SUT2#MA0400.1100.02032519.67474110AGTTCTGTTTTAAATTTTCGGAGTTTATCAT-
br_Z1#MA0010.110.02092019.95796111AGTTCTGTTTTGATTTGTCTATTAC-
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