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MacroAPE 1083:FOXD1 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.627036877543408;12.502251288881553;2.627036877543408;4.243674956031654!2;8.316589070182381;2.42495711773238;1.6166380784882461;9.641815733...")
 
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79-129A1;0.451474!12180-129A2;0.000101246!12181-129A3;1.48604e-05!12176-128I7;4.62816e-05!12177-128I8;0.000360985!12182-129A4;0.000236776!12183-129A5;6.33129e-05!12184-129A6;4.9161e-06!10809-111A8;7.11658e-05!10597-108E3;0.041008!10717-109I6;0.833776!10455-106G5;0.0743449!10534-107G3;0.610419!10429-106D6;0.890742!10464-106H5;0.752969!10827-111C8;0.69151!10789-110H6;0.407632!10828-111C9;0.157233!10788-110H5;0.575262!10792-110H9;0.497445!10765-110E9;0.968629!10829-111D1;0.385422!10830-111D2;0.121033!10831-111D3;0.958108!10832-111D4;0.772359!10833-111D5;0.554562!10764-110E8;0.724927!10770-110F5;0.44585!10399-106A3;0.451645!10400-106A4;0.220517!10405-106A9;0.240058!10834-111D6;0.2751!10835-111D7;0.092786!10836-111D8;0.281515!10837-111D9;0.911443!10699-109G6;0.0205946!10802-111A1;0.00976028!10796-110I4;0.0492209!10010-101C1;0.178602!10810-111A9;0.0658265!10421-106C7;0.431596!10708-109H6;0.131471!12235-129G3;0.160091!12236-129G4;0.582178!12237-129G5;0.665365!10167-103B5;0.423998!10151-102I7;0.243103!10428-106D5;0.669778!10795-110I3;0.821609!10805-111A4;0.0337822!10052-101G7;0.0812378!10189-103D9;0.0563482!10589-108D4;0.0889124!10425-106D2;0.644553!10427-106D4;0.846683!10702-109G9;0.636088!10432-106D9;0.454516!10496-107C1;0.738745!10718-109I7;0.166821!10011-101C2;0.193753!10053-101G8;0.107039!10686-109F2;0.000152463!10084-102B3;0.363127!10012-101C3;0.699085!10085-102B4;0.645546!10482-107A5;0.386706!10419-106C5;0.668164!10080-102A8;0.368306!10760-110E4;0.245787!10709-109H7;0.0480352!10710-109H8;0.935925!10703-109H1;0.12926!10719-109I8;0.383771!10642-109A3;0.183988!10177-103C6;0.26172!10164-103B2;0.326516!10173-103C2;0.763245!10166-103B4;0.837082!10083-102B2;0.814574!10188-103D8;0.847369!10552-107I3;0.721466!10553-107I4;0.287456!10013-101C4;0.816088!10536-107G5;0.195244!10618-108G6;0.826414!10423-106C9;0.000441591!10785-110H2;0.26087!12238-129G6;0.286483!12239-129G7;0.356672!12240-129G8;0.75984!10416-106C2;0.603607!10801-110I9;0.292816!10766-110F1;0.776729!10824-111C5;0.68037!10825-111C6;0.00545422!10826-111C7;0.00370946!10454-106G4;0.00760542!10409-106B4;0.11469!10638-108I8;0.535782!10636-108I6;0.185416!10513-107D9;0.617767!10420-106C6;0.187728!10082-102B1;0.779577!10014-101C5;0.0556256!10070-101I7;0.0811115!10452-106G2;0.111334!10453-106G3;0.613705!10449-106F8;0.921776!10042-101F6;0.813417!10069-101I6;0.867886!10193-103E4;0.0832547!10631-108I1;0.624689!10438-106E6;0.903428!10488-107B2;0.829152!10196-103E7;0.189766!10071-101I8;0.223001!10071-101I8;0.480326!10041-101F5;0.544957!10451-106G1;0.639262!10450-106F9;0.189099!10604-108F1;0.126831!10605-108F2;0.859537!10606-108F3;0.985469!10603-108E9;0.682407!10497-107C2;0.577436!10448-106F7;0.230416!10643-109A4;0.238158!10426-106D3;0.779005!10431-106D8;0.968196!10197-103E8;0.198227!10443-106F2;0.335818!10815-111B5;0.58534!10816-111B6;0.365201!10817-111B7;0.448498!10015-101C6;0.306646!10410-106B5;0.0992383!10054-101G9;0.672538!10758-110E2;0.932879!10711-109H9;0.00608329!10040-101F4;9.79252e-05!10470-106I2;0.690957!10415-106C1;0.205435!10198-103E9;0.490284!10614-108G2;0.0309255!10612-108F9;0.681157!10549-107H9;0.491093!10615-108G3;0.440592!10487-107B1;0.615853!10433-106E1;0.318787!10688-109F4;0.278781!10444-106F3;0.601967!10444-106F3;0.210857!10485-107A8;0.209719!10413-106B8;0.160837!10175-103C4;0.680408!10161-103A8;0.410963!12131-128D7;0.792257!10624-108H3;0.00522453!10712-109I1;0.647458!10205-103F7;0.47919!10206-103F8;0.317524!10207-103F9;0.109838!10050-101G5;0.127895!10051-101G6;0.399445!10016-101C7;0.127833!10046-101G1;0.0486016!10778-110G4;0.130817!10633-108I3;0.509828!10818-111B8;0.655088!10819-111B9;0.207493!10820-111C1;0.136809!10484-107A7;0.191906!10808-111A7;0.316988!10169-103B7;0.480302!10153-102I9;0.186365!13425-144D5;0.874654!13433-144E4;0.363985!13437-144E8;0.682249!11904-125F5;0.41262!11905-125F6;0.584397!10039-101F3;0.179393!10791-110H8;0.619259!10017-101C8;0.29755!10045-101F9;0.594417!10509-107D5;0.703989!10839-111E2;0.505353!10692-109F8;0.511146!10079-102A7;0.711744!10078-102A6;0.310413!10721-110A1;0.183887!10569-108B2;0.0617376!10570-108B3;0.183115!10571-108B4;0.173029!10647-109A8;0.0887346!10752-110D5;0.483814!10782-110G8;0.3905!10726-110A6;0.00695219!10018-101C9;0.387595!10086-102B5;0.0573425!10182-103D2;0.607745!10165-103B3;0.469579!10499-107C4;0.853845!10408-106B3;0.724522!10019-101D1;0.837033!10068-101I5;0.00640936!10075-102A3;0.0578776!10077-102A5;0.0326831!10727-110A7;0.0118886!10775-110G1;0.12963!10412-106B7;0.188722!12231-129F8;0.26803!12232-129F9;0.098821!12233-129G1;0.111865!12234-129G2;0.21509!10414-106B9;0.172356!10170-103B8;0.683493!10183-103D3;0.365983!10150-102I6;0.402454!10174-103C3;0.723292!10155-103A2;0.6844!10038-101F2;0.982306!10838-111E1;0.732251!10759-110E3;0.491219!10514-107E1;0.984758!10465-106H6;0.35434!10691-109F7;0.593139!10843-111E6;0.472882!10844-111E7;0.745155!11747-123G1;0.683165!11748-123G2;0.0924111!11749-123G3;0.342125!11750-123G4;0.0521392!11751-123G5;0.311354!11840-124H4;0.391891!11752-123G6;0.306836!11753-123G7;0.863792!11754-123G8;0.528997!11755-123G9;0.220451!11756-123H1;0.145662!11833-124G6;0.345209!11760-123H5;0.502436!11836-124G9;0.135103!11758-123H3;0.102355!11835-124G8;0.05318!11762-123H7;0.0451416!11838-124H2;0.122322!11757-123H2;0.203745!11759-123H4;0.0245483!11761-123H6;0.249826!11842-124H6;0.307875!11837-124H1;0.776315!10568-108B1;0.136516!13230-141I8;0.0011935!13231-141I9;0.496088!10696-109G3;0.463776!10493-107B7;0.61774!10494-107B8;0.00572724!10850-111F4;0.403467!10851-111F5;0.02647!10852-111F6;0.363079!10853-111F7;0.146078!10854-111F8;0.55216!10855-111F9;0.0700373!10856-111G1;0.0605594!10847-111F1;0.0499849!10846-111E9;5.84534e-05!10848-111F2;0.0013153!10845-111E8;0.0143494!10857-111G2;0.17759!10858-111G3;0.031531!10156-103A3;0.0169139!11901-125F2;0.737199!11902-125F3;0.483886!11903-125F4;0.553676!10689-109F5;0.389577!10648-109A9;0.0713298!10784-110H1;0.172779!10744-110C6;0.984629!10772-110F7;0.786446!10474-106I6;0.794248!10600-108E6;0.662306!10684-109E9;0.00136998!12226-129F3;0.432889!12227-129F4;0.896328!10508-107D4;0.847492!10539-107G8;0.532061!10607-108F4;0.112201!10555-107I6;0.69578!10774-110F9;0.419259!10637-108I7;0.288754!10663-109C6;0.70059!10728-110A8;0.865526!10729-110A9;0.21517!10430-106D7;0.278679!10730-110B1;0.556537!10813-111B3;0.973123!10812-111B2;0.438913!10037-101F1;0.0106302!10172-103C1;0.638025!10163-103B1;0.264403!10076-102A4;0.963383!10073-102A1;0.825489!10036-101E9;0.562221!10195-103E6;0.712489!10277-104E7;0.605129!10434-106E2;0.623209!10550-107I1;0.613153!10545-107H5;0.669031!10544-107H4;0.440174!10704-109H2;0.719602!10510-107D6;0.0760551!10558-107I9;0.316785!10020-101D2;0.946125!10732-110B3;0.285337!10049-101G4;0.0154243!10698-109G5;0.0207324!10437-106E5;0.0907373!10417-106C3;0.435859!10035-101E8;0.462788!10171-103B9;0.650448!10157-103A4;0.508624!10034-101E7;0.786871!10072-101I9;0.659377!10199-103F1;0.462063!10200-103F2;0.0426299!10697-109G4;0.0290322!10723-110A3;0.959673!10179-103C8;0.105062!10160-103A7;0.192213!10180-103C9;0.507128!10162-103A9;0.440047!10021-101D3;0.33992!10840-111E3;0.656665!10706-109H4;0.906521!10033-101E6;0.322724!10032-101E5;0.730091!10490-107B4;0.595939!10439-106E7;0.198103!10022-101D4;0.233938!10176-103C5;0.0116804!10469-106I1;0.393572!10067-101I4;0.22091!10411-106B6;0.744051!10471-106I3;0.00780788!10030-101E3;0.478877!10475-106I7;0.948161!10787-110H4;0.798084!10477-106I9;0.12885!10695-109G2;0.0109113!11771-123I7;0.759102!11772-123I8;0.87552!11773-123I9;0.976761!10093-102C3;0.0538173!10442-106F1;0.120303!10442-106F1;0.1005!10201-103F3;0.0642595!10639-108I9;0.376547!11843-124H7;0.401906!11841-124H5;0.19842!10693-109F9;0.000334922!10436-106E4;0.942537!10483-107A6;0.492445!10282-104F3;0.679879!10023-101D5;0.0444334!10066-101I3;0.0015127!10065-101I2;0.855017!10800-110I8;0.686428!10610-108F7;0.96012!10841-111E4;0.644687!10541-107H1;0.131953!10842-111E5;0.705949!10562-108A4;0.991239!10024-101D6;0.798541!10064-101I1;0.135674!10609-108F6;0.206581!10048-101G3;0.326152!10781-110G7;0.0579118!10181-103D1;0.657812!10159-103A6;0.484476!10056-101H2;0.948842!10737-110B8;0.346101!10025-101D7;0.49824!10044-101F8;0.0444682!10424-106D1;0.0803139!10463-106H4;0.996967!10616-108G4;0.825762!10486-107A9;0.356854!10062-101H8;0.60076!10202-103F4;0.011393!10158-103A5;0.0417796!10441-106E9;0.397293!10031-101E4;0.136668!10063-101H9;0.58802!10063-101H9;0.564007!11763-123H8;0.364026!11765-123I1;0.554944!11768-123I4;0.531604!10807-111A6;0.2147!10790-110H7;0.0667431!10798-110I6;0.0356325!10786-110H3;0.217669!10591-108D6;0.36223!10593-108D8;0.376249!10590-108D5;0.73443!10026-101D8;0.958218!10096-102C6;0.176822!10168-103B6;0.342216!10154-103A1;0.414281!10209-103G2;0.926039!10061-101H7;0.00248916!10027-101D9;0.043802!10043-101F7;0.163647!10783-110G9;0.0587311!10028-101E1;0.795736!10060-101H6;0.00593797!10203-103F5;0.120213!10059-101H5;0.0715646!10047-101G2;0.0613081!10029-101E2;0.00463731!10058-101H4;0.0121046!10418-106C4;0.0669666!10492-107B6;0.733637!10694-109G1;0.0362993!10797-110I5;0.678841!10057-101H3;0.681787!10100-102D1;0.206543!10055-101H1;0.14756!10204-103F6;0.33067!10191-103E2;0.0457692!10563-108A5;0.0255415
|name=FOXD1_si
|name=FOXD1_si
|tomtom_result=FOXD1#MA0031.1;-2;8.24234e-08;3.92335e-05;7.7095e-05;8;CTTTGTTTACTTAAG;ATGTTTAC;-!Foxa2#MA0047.2;-3;1.76923e-07;8.42156e-05;8.2743e-05;12;CTTTGTTTACTTAAG;TGTTTACTTAGG;+!FKH1#MA0296.1;4;4.61701e-07;0.00021977;0.000143951;15;CTTTGTTTACTTAAG;TCCTCTTTGTTTACAATTCA;-!FOXF2#MA0030.1;-1;1.07632e-06;0.000512329;0.000251685;14;CTTTGTTTACTTAAG;ATTGTTTACGTTTG;-!FKH2#MA0297.1;-3;3.41037e-06;0.00162333;0.000565589;7;CTTTGTTTACTTAAG;TGTTTAC;-!fkh#MA0446.1;-3;3.62808e-06;0.00172696;0.000565589;11;CTTTGTTTACTTAAG;TGTTTGCTTAA;+!FOXA1#MA0148.1;-3;6.09126e-06;0.00289944;0.000786687;11;CTTTGTTTACTTAAG;TGTTTACTTTG;+!slp1#MA0458.1;-2;6.72847e-06;0.00320275;0.000786687;11;CTTTGTTTACTTAAG;TTGTTTACATT;+!FOXO3#MA0157.1;-3;2.40996e-05;0.0114714;0.00250463;8;CTTTGTTTACTTAAG;TGTTTACA;-!br_Z4#MA0013.1;-1;7.61946e-05;0.0362686;0.00712689;11;CTTTGTTTACTTAAG;TTTGTTTACTA;-!Foxa2#MA0047.2;0;0.000110638;0.0526638;0.0094078;12;CTTTGTTTACTTAAG;CAATATTTACTT;+!HCM1#MA0317.1;-2;0.000466813;0.222203;0.0363863;8;CTTTGTTTACTTAAG;TTGTTTAT;-!Foxq1#MA0040.1;0;0.000575397;0.273889;0.0414;11;CTTTGTTTACTTAAG;TATTGTTTATT;+!SRY#MA0084.1;-1;0.000868237;0.413281;0.0580078;9;CTTTGTTTACTTAAG;ATTGTTTAC;-!YAP6#MA0418.1;1;0.0012421;0.591238;0.0774533;15;CTTTGTTTACTTAAG;GGTCTGATTACGTAAGCGAC;+!Foxd3#MA0041.1;0;0.00180139;0.857462;0.105309;12;CTTTGTTTACTTAAG;GAATGTTTGTTT;+!FOXI1#MA0042.1;0;0.0032917;1.56685;0.172594;12;CTTTGTTTACTTAAG;GGATGTTTGTTT;+!YAP1#MA0415.1;0;0.0033214;1.58099;0.172594;15;CTTTGTTTACTTAAG;ATTTGCTTACGTAAGCTCGT;+!CIN5#MA0284.1;-4;0.00453694;2.15958;0.218309;10;CTTTGTTTACTTAAG;GATTACGTAA;-!NHP6A#MA0345.1;5;0.00466794;2.22194;0.218309;15;CTTTGTTTACTTAAG;ATGACCTATATATAAAAATGA;+!NHP6B#MA0346.1;1;0.00604059;2.87532;0.269052;15;CTTTGTTTACTTAAG;TCATATTATATATAAATAAA;-!SMP1#MA0383.1;4;0.00670664;3.19236;0.28514;15;CTTTGTTTACTTAAG;TTACCTATAATTAAATTAGCA;+!Ar#MA0007.1;7;0.00770607;3.66809;0.294762;15;CTTTGTTTACTTAAG;ATAAGAACACCCTGTACCCGCC;+!mirr#MA0233.1;-3;0.00787836;3.7501;0.294762;5;CTTTGTTTACTTAAG;TGTTT;-!STB3#MA0390.1;6;0.0113089;5.38305;0.391772;15;CTTTGTTTACTTAAG;GTCCAAAATTTTTCACTCTGG;+!ara#MA0210.1;-3;0.0122917;5.85085;0.41061;5;CTTTGTTTACTTAAG;TGTTA;-!CG11617#MA0173.1;-5;0.014722;7.00766;0.460474;7;CTTTGTTTACTTAAG;TTAACAT;+!NFIL3#MA0025.1;-3;0.014769;7.03004;0.460474;11;CTTTGTTTACTTAAG;ATGTTACATAA;-!br_Z3#MA0012.1;2;0.0175299;8.34422;0.521149;9;CTTTGTTTACTTAAG;CTTTTAGTTTA;-!FOXC1#MA0032.1;-7;0.0178294;8.48678;0.521149;8;CTTTGTTTACTTAAG;TACTTACC;-
}}
}}

Latest revision as of 14:51, 7 September 2012

Full Name: FOXD1_si

Motif matrix
POACGT
12.62703687754340812.5022512888815532.6270368775434084.243674956031654
28.3165890701823812.424957117732381.61663807848824619.641815733597014
37.7957302116897493.7541350154691242.13749693698088238.312637835860247
40.80831903924412310.80831903924412311.616638078488246118.766723843023506
50.80831903924412315.36682185963523615.0165400618765170.8083190392441231
60.80831903924412310.80831903924412310.808319039244123119.57504288226762
70.00.00.808319039244123121.19168096075589
80.00.00.808319039244123121.191680960755868
920.3833619215117530.00.80831903924412310.8083190392441231
100.018.7667238430235062.424957117732380.8083190392441231
116.6999509916941365.3668218596352361.61663807848824618.316589070182381
124.5585028203911241.61663807848824610.015.824859101120653
139.9332271486706284.5585028203911241.61663807848824615.891631952450002
149.3583067871676465.3668218596352364.84991423546473752.42495711773238
155.7709813792572925.25407375508679410.5707853460338350.40415951962206037

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FOXD1#MA0031.1-28.24234e-083.92335e-057.7095e-058CTTTGTTTACTTAAGATGTTTAC-
Foxa2#MA0047.2-31.76923e-078.42156e-058.2743e-0512CTTTGTTTACTTAAGTGTTTACTTAGG+
FKH1#MA0296.144.61701e-070.000219770.00014395115CTTTGTTTACTTAAGTCCTCTTTGTTTACAATTCA-
FOXF2#MA0030.1-11.07632e-060.0005123290.00025168514CTTTGTTTACTTAAGATTGTTTACGTTTG-
FKH2#MA0297.1-33.41037e-060.001623330.0005655897CTTTGTTTACTTAAGTGTTTAC-
fkh#MA0446.1-33.62808e-060.001726960.00056558911CTTTGTTTACTTAAGTGTTTGCTTAA+
FOXA1#MA0148.1-36.09126e-060.002899440.00078668711CTTTGTTTACTTAAGTGTTTACTTTG+
slp1#MA0458.1-26.72847e-060.003202750.00078668711CTTTGTTTACTTAAGTTGTTTACATT+
FOXO3#MA0157.1-32.40996e-050.01147140.002504638CTTTGTTTACTTAAGTGTTTACA-
br_Z4#MA0013.1-17.61946e-050.03626860.0071268911CTTTGTTTACTTAAGTTTGTTTACTA-
Foxa2#MA0047.200.0001106380.05266380.009407812CTTTGTTTACTTAAGCAATATTTACTT+
HCM1#MA0317.1-20.0004668130.2222030.03638638CTTTGTTTACTTAAGTTGTTTAT-
Foxq1#MA0040.100.0005753970.2738890.041411CTTTGTTTACTTAAGTATTGTTTATT+
SRY#MA0084.1-10.0008682370.4132810.05800789CTTTGTTTACTTAAGATTGTTTAC-
YAP6#MA0418.110.00124210.5912380.077453315CTTTGTTTACTTAAGGGTCTGATTACGTAAGCGAC+
Foxd3#MA0041.100.001801390.8574620.10530912CTTTGTTTACTTAAGGAATGTTTGTTT+
FOXI1#MA0042.100.00329171.566850.17259412CTTTGTTTACTTAAGGGATGTTTGTTT+
YAP1#MA0415.100.00332141.580990.17259415CTTTGTTTACTTAAGATTTGCTTACGTAAGCTCGT+
CIN5#MA0284.1-40.004536942.159580.21830910CTTTGTTTACTTAAGGATTACGTAA-
NHP6A#MA0345.150.004667942.221940.21830915CTTTGTTTACTTAAGATGACCTATATATAAAAATGA+
NHP6B#MA0346.110.006040592.875320.26905215CTTTGTTTACTTAAGTCATATTATATATAAATAAA-
SMP1#MA0383.140.006706643.192360.2851415CTTTGTTTACTTAAGTTACCTATAATTAAATTAGCA+
Ar#MA0007.170.007706073.668090.29476215CTTTGTTTACTTAAGATAAGAACACCCTGTACCCGCC+
mirr#MA0233.1-30.007878363.75010.2947625CTTTGTTTACTTAAGTGTTT-
STB3#MA0390.160.01130895.383050.39177215CTTTGTTTACTTAAGGTCCAAAATTTTTCACTCTGG+
ara#MA0210.1-30.01229175.850850.410615CTTTGTTTACTTAAGTGTTA-
CG11617#MA0173.1-50.0147227.007660.4604747CTTTGTTTACTTAAGTTAACAT+
NFIL3#MA0025.1-30.0147697.030040.46047411CTTTGTTTACTTAAGATGTTACATAA-
br_Z3#MA0012.120.01752998.344220.5211499CTTTGTTTACTTAAGCTTTTAGTTTA-
FOXC1#MA0032.1-70.01782948.486780.5211498CTTTGTTTACTTAAGTACTTACC-
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