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== ENCODE TF ChIP-seq peak enrichment analysis ==
== Sample specificity ==
{{#info: Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki>  0.05)  after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner}}  
{{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}}
 
{{#ifexpr: {{#ask:[[tf_chipseq_enrich_entregeneid::10664]]|format=count}} > 0 |
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var data = [];
//var pvals = ['</html>{{#replace:{{{macroape_1083_sample_pvalues}}}|!|','}}<html>'];
var repnames = 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INE','Zaphod','Zaphod3','polypurine','polypyrimidine','tRNA-Ala-GCY','tRNA-Ala-GCY_','tRNA-Arg-AGG','tRNA-Asn-AAC','tRNA-Asn-AAT','tRNA-Gln-CAA_','tRNA-Gly-GGA','tRNA-Leu-TTA','tRNA-Leu-TTA(m)','tRNA-Met-i','tRNA-Pro-CCA','tRNA-Ser-AGY','tRNA-Ser-TCA(m)'];
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for(i1=0;i1<repnames.length;i1++){
//pval = pvals[i1].split(";");
data.push([repnames[i1],values[1]]);
}
 
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{{#ask:[[tf_chipseq_enrich_entregeneid::10664]]|?Tf_chipseq_enrich_values|intro=<table id="tf_chipseq_enrich"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|searchlabel=}}
|No analysis results for this cluster
}}

Revision as of 17:58, 10 September 2012


Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon

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