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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0008380;RNA splicing;0.000469208992587783;101214,19205,15381!GO:0006397;mRNA processing;0.000469561809974684;101214,19205,15381!GO:0016071;mRNA metabolic process;0.000469561809974684;101214,19205,15381!GO:0006396;RNA processing;0.000893852557727055;101214,19205,15381!GO:0003723;RNA binding;0.00257348900595761;101214,19205,15381!GO:0005634;nucleus;0.0041718075817128;101214,19205,11737,70998,15381!GO:0016070;RNA metabolic process;0.00756204945523937;101214,19205,70998,15381!GO:0010467;gene expression;0.0132872715897345;101214,19205,70998,15381!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0172880752005752;101214,19205,70998,15381!GO:0045120;pronucleus;0.0189441460441609;15381!GO:0016363;nuclear matrix;0.0189441460441609;11737!GO:0043231;intracellular membrane-bound organelle;0.0189441460441609;101214,19205,11737,70998,15381!GO:0043227;membrane-bound organelle;0.0189441460441609;101214,19205,11737,70998,15381!GO:0030529;ribonucleoprotein complex;0.0215939053400419;19205,15381!GO:0043229;intracellular organelle;0.0273558350317909;101214,19205,11737,70998,15381!GO:0043226;organelle;0.0273558350317909;101214,19205,11737,70998,15381!GO:0000166;nucleotide binding;0.0273558350317909;101214,19205,15381!GO:0043283;biopolymer metabolic process;0.0300128468366282;101214,19205,70998,15381!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0008380;RNA splicing;0.000469208992587783;101214,19205,15381!GO:0006397;mRNA processing;0.000469561809974684;101214,19205,15381!GO:0016071;mRNA metabolic process;0.000469561809974684;101214,19205,15381!GO:0006396;RNA processing;0.000893852557727055;101214,19205,15381!GO:0003723;RNA binding;0.00257348900595761;101214,19205,15381!GO:0005634;nucleus;0.0041718075817128;101214,19205,11737,70998,15381!GO:0016070;RNA metabolic process;0.00756204945523937;101214,19205,70998,15381!GO:0010467;gene expression;0.0132872715897345;101214,19205,70998,15381!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0172880752005752;101214,19205,70998,15381!GO:0045120;pronucleus;0.0189441460441609;15381!GO:0016363;nuclear matrix;0.0189441460441609;11737!GO:0043231;intracellular membrane-bound organelle;0.0189441460441609;101214,19205,11737,70998,15381!GO:0043227;membrane-bound organelle;0.0189441460441609;101214,19205,11737,70998,15381!GO:0030529;ribonucleoprotein complex;0.0215939053400419;19205,15381!GO:0043229;intracellular organelle;0.0273558350317909;101214,19205,11737,70998,15381!GO:0043226;organelle;0.0273558350317909;101214,19205,11737,70998,15381!GO:0000166;nucleotide binding;0.0273558350317909;101214,19205,15381!GO:0043283;biopolymer metabolic process;0.0300128468366282;101214,19205,70998,15381!
}}

Revision as of 11:14, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79317403..79317419,+p1@Ptbp1
Mm9::chr11:116714397..116714413,-p1@Srsf2
Mm9::chr14:52723666..52723686,-p1@Hnrnpc
Mm9::chr14:52723690..52723701,-p2@Hnrnpc
Mm9::chr17:80606639..80606648,-p1@Srsf7
Mm9::chr5:114580714..114580735,-p@chr5:114580714..114580735
-
Mm9::chr6:49214013..49214059,-p1@Tra2a
Mm9::chr9:62189896..62189919,+p5@Anp32a
Mm9::chrX:50265409..50265538,+p1@Phf6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0008380RNA splicing0.000469208992587783
GO:0006397mRNA processing0.000469561809974684
GO:0016071mRNA metabolic process0.000469561809974684
GO:0006396RNA processing0.000893852557727055
GO:0003723RNA binding0.00257348900595761
GO:0005634nucleus0.0041718075817128
GO:0016070RNA metabolic process0.00756204945523937
GO:0010467gene expression0.0132872715897345
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0172880752005752
GO:0045120pronucleus0.0189441460441609
GO:0016363nuclear matrix0.0189441460441609
GO:0043231intracellular membrane-bound organelle0.0189441460441609
GO:0043227membrane-bound organelle0.0189441460441609
GO:0030529ribonucleoprotein complex0.0215939053400419
GO:0043229intracellular organelle0.0273558350317909
GO:0043226organelle0.0273558350317909
GO:0000166nucleotide binding0.0273558350317909
GO:0043283biopolymer metabolic process0.0300128468366282



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}