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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0007603;phototransduction, visible light;0.028009667856003;14688!GO:0007265;Ras protein signal transduction;0.028009667856003;213498,14688!GO:0004013;adenosylhomocysteinase activity;0.028009667856003;229709!GO:0016802;trialkylsulfonium hydrolase activity;0.028009667856003;229709!GO:0009628;response to abiotic stimulus;0.028009667856003;320795,14688!GO:0007213;acetylcholine receptor signaling, muscarinic pathway;0.028009667856003;14688!GO:0006972;hyperosmotic response;0.028009667856003;320795!GO:0004839;ubiquitin activating enzyme activity;0.0306322172622778;!GO:0016801;hydrolase activity, acting on ether bonds;0.0326707847199443;229709!GO:0008641;small protein activating enzyme activity;0.0391963502129323;!GO:0006970;response to osmotic stress;0.0488628921394105;320795!GO:0007264;small GTPase mediated signal transduction;0.0488628921394105;213498,14688!GO:0030010;establishment of cell polarity;0.0489685997794773;213498!}}
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|gostat_on_MCL_coexpression=GO:0007603;phototransduction, visible light;0.028009667856003;14688!GO:0007265;Ras protein signal transduction;0.028009667856003;213498,14688!GO:0004013;adenosylhomocysteinase activity;0.028009667856003;229709!GO:0016802;trialkylsulfonium hydrolase activity;0.028009667856003;229709!GO:0009628;response to abiotic stimulus;0.028009667856003;320795,14688!GO:0007213;acetylcholine receptor signaling, muscarinic pathway;0.028009667856003;14688!GO:0006972;hyperosmotic response;0.028009667856003;320795!GO:0004839;ubiquitin activating enzyme activity;0.0306322172622778;!GO:0016801;hydrolase activity, acting on ether bonds;0.0326707847199443;229709!GO:0008641;small protein activating enzyme activity;0.0391963502129323;!GO:0006970;response to osmotic stress;0.0488628921394105;320795!GO:0007264;small GTPase mediated signal transduction;0.0488628921394105;213498,14688!GO:0030010;establishment of cell polarity;0.0489685997794773;213498!
}}

Revision as of 11:22, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:37781865..37781924,-p1@Gcap14
Mm9::chr3:107499380..107499492,-p1@Ahcyl1
Mm9::chr3:87421463..87421535,+p1@Arhgef11
Mm9::chr4:154865462..154865520,+p1@Gnb1
Mm9::chr7:104937295..104937344,+p5@Pak1
Mm9::chrX:20240024..20240035,+p3@Uba1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007603phototransduction, visible light0.028009667856003
GO:0007265Ras protein signal transduction0.028009667856003
GO:0004013adenosylhomocysteinase activity0.028009667856003
GO:0016802trialkylsulfonium hydrolase activity0.028009667856003
GO:0009628response to abiotic stimulus0.028009667856003
GO:0007213acetylcholine receptor signaling, muscarinic pathway0.028009667856003
GO:0006972hyperosmotic response0.028009667856003
GO:0004839ubiquitin activating enzyme activity0.0306322172622778
GO:0016801hydrolase activity, acting on ether bonds0.0326707847199443
GO:0008641small protein activating enzyme activity0.0391963502129323
GO:0006970response to osmotic stress0.0488628921394105
GO:0007264small GTPase mediated signal transduction0.0488628921394105
GO:0030010establishment of cell polarity0.0489685997794773



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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