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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005783;endoplasmic reticulum;0.000115134218793879;66624,103963,64136,20832!GO:0005789;endoplasmic reticulum membrane;0.00172589976863339;66624,103963!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00172589976863339;66624,103963!GO:0044432;endoplasmic reticulum part;0.00172589976863339;66624,103963!GO:0005787;signal peptidase complex;0.00534662679894864;66624!GO:0044444;cytoplasmic part;0.0076367828882567;66624,103963,64136,20832!GO:0006465;signal peptide processing;0.0076367828882567;66624!GO:0012505;endomembrane system;0.00850250242669098;66624,103963!GO:0009003;signal peptidase activity;0.00850250242669098;66624!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00850250242669098;103963!GO:0004576;oligosaccharyl transferase activity;0.00850250242669098;103963!GO:0006518;peptide metabolic process;0.0100191593261141;66624!GO:0031090;organelle membrane;0.0221189360919881;66624,103963!GO:0005737;cytoplasm;0.0312754297022444;66624,103963,64136,20832!}}
{{MCL_coexpression_mm9
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}}

Revision as of 11:27, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:17130369..17130373,-p@chr16:17130369..17130373
-
Mm9::chr16:17132418..17132460,-p1@Sdf2l1
Mm9::chr6:88034495..88034521,+p1@Rpn1
Mm9::chr7:107007382..107007416,-p1@Spcs2
Mm9::chrX:71032542..71032569,+p2@Ssr4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005783endoplasmic reticulum0.000115134218793879
GO:0005789endoplasmic reticulum membrane0.00172589976863339
GO:0042175nuclear envelope-endoplasmic reticulum network0.00172589976863339
GO:0044432endoplasmic reticulum part0.00172589976863339
GO:0005787signal peptidase complex0.00534662679894864
GO:0044444cytoplasmic part0.0076367828882567
GO:0006465signal peptide processing0.0076367828882567
GO:0012505endomembrane system0.00850250242669098
GO:0009003signal peptidase activity0.00850250242669098
GO:0004579dolichyl-diphosphooligosaccharide-protein glycotransferase activity0.00850250242669098
GO:0004576oligosaccharyl transferase activity0.00850250242669098
GO:0006518peptide metabolic process0.0100191593261141
GO:0031090organelle membrane0.0221189360919881
GO:0005737cytoplasm0.0312754297022444



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}