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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0003860;3-hydroxyisobutyryl-CoA hydrolase activity;0.00169835095600723;227095!GO:0009083;branched chain family amino acid catabolic process;0.00396281889735021;227095!GO:0009081;branched chain family amino acid metabolic process;0.00396281889735021;227095!GO:0016289;CoA hydrolase activity;0.00679340382402893;227095!GO:0009063;amino acid catabolic process;0.0135868076480579;227095!GO:0009310;amine catabolic process;0.0135868076480579;227095!GO:0044270;nitrogen compound catabolic process;0.0135868076480579;227095!GO:0016790;thiolester hydrolase activity;0.0186818605160796;227095!GO:0006520;amino acid metabolic process;0.0403830116206164;227095!GO:0006519;amino acid and derivative metabolic process;0.047893496959404;227095!GO:0009308;amine metabolic process;0.0499598239558794;227095!GO:0006807;nitrogen compound metabolic process;0.0499598239558794;227095!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0003860;3-hydroxyisobutyryl-CoA hydrolase activity;0.00169835095600723;227095!GO:0009083;branched chain family amino acid catabolic process;0.00396281889735021;227095!GO:0009081;branched chain family amino acid metabolic process;0.00396281889735021;227095!GO:0016289;CoA hydrolase activity;0.00679340382402893;227095!GO:0009063;amino acid catabolic process;0.0135868076480579;227095!GO:0009310;amine catabolic process;0.0135868076480579;227095!GO:0044270;nitrogen compound catabolic process;0.0135868076480579;227095!GO:0016790;thiolester hydrolase activity;0.0186818605160796;227095!GO:0006520;amino acid metabolic process;0.0403830116206164;227095!GO:0006519;amino acid and derivative metabolic process;0.047893496959404;227095!GO:0009308;amine metabolic process;0.0499598239558794;227095!GO:0006807;nitrogen compound metabolic process;0.0499598239558794;227095!
}}

Revision as of 11:27, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:52901876..52901906,+p1@Hibch
Mm9::chr1:52901915..52901938,+p2@Hibch
Mm9::chr1:52901943..52901954,+p4@Hibch
Mm9::chr6:136610198..136610212,-p7@Plbd1
Mm9::chr6:145159661..145159742,+p1@Lyrm5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:00038603-hydroxyisobutyryl-CoA hydrolase activity0.00169835095600723
GO:0009083branched chain family amino acid catabolic process0.00396281889735021
GO:0009081branched chain family amino acid metabolic process0.00396281889735021
GO:0016289CoA hydrolase activity0.00679340382402893
GO:0009063amino acid catabolic process0.0135868076480579
GO:0009310amine catabolic process0.0135868076480579
GO:0044270nitrogen compound catabolic process0.0135868076480579
GO:0016790thiolester hydrolase activity0.0186818605160796
GO:0006520amino acid metabolic process0.0403830116206164
GO:0006519amino acid and derivative metabolic process0.047893496959404
GO:0009308amine metabolic process0.0499598239558794
GO:0006807nitrogen compound metabolic process0.0499598239558794



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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