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MCL coexpression mm9:208: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:17954736..17954814,-p1@Ccdc28a
Mm9::chr11:30549453..30549470,-p3@Acyp2
Mm9::chr11:30549485..30549498,-p4@Acyp2
Mm9::chr11:30549510..30549523,-p5@Acyp2
Mm9::chr11:54117682..54117738,+p2@Acsl6
Mm9::chr11:69476127..69476138,-p2@Mpdu1
Mm9::chr12:29435230..29435283,-p1@Ttc15
Mm9::chr12:4082575..4082594,+p2@Dnajc27
Mm9::chr12:4082596..4082638,+p1@Dnajc27
Mm9::chr12:71008869..71008876,+p@chr12:71008869..71008876
+
Mm9::chr12:73862116..73862127,+p3@Ppm1a
Mm9::chr13:41345116..41345137,+p5@BC024659
Mm9::chr14:14793700..14793713,-p4@Thoc7
Mm9::chr15:76077268..76077286,+p3@Grina
Mm9::chr15:79763014..79763095,-p2@Cbx7
Mm9::chr15:89284599..89284648,+p2@Mapk8ip2
Mm9::chr16:44139372..44139396,-p5@Atp6v1a
Mm9::chr17:22218258..22218274,-p@chr17:22218258..22218274
-
Mm9::chr17:23908457..23908466,-p4@Flywch1
Mm9::chr17:23908472..23908504,-p2@Flywch1
Mm9::chr17:23908510..23908562,-p1@Flywch1
Mm9::chr17:47832120..47832153,+p1@Frs3
Mm9::chr18:5592429..5592467,-p1@Gm10125
Mm9::chr19:45635059..45635134,+p1@Dpcd
Mm9::chr19:59018084..59018138,-p3@Hspa12a
Mm9::chr1:193541759..193541783,+p5@Lpgat1
Mm9::chr1:37356704..37356715,+p2@Inpp4a
Mm9::chr1:75233073..75233096,+p3@Dnajb2
Mm9::chr2:120676105..120676123,-p1@Ttbk2
Mm9::chr2:120676125..120676153,-p2@Ttbk2
Mm9::chr2:31101562..31101575,+p4@Ncs1
Mm9::chr2:91550742..91550755,-p2@Atg13
Mm9::chr3:107499263..107499266,-p4@Ahcyl1
Mm9::chr3:36512292..36512319,-p1@Bbs7
Mm9::chr4:149148347..149148388,-p2@Slc25a33
Mm9::chr5:18732720..18732808,+p1@Magi2
Mm9::chr6:71781420..71781431,+p2@Immt
Mm9::chr6:91106734..91106759,+p3@Hdac11
Mm9::chr8:119467287..119467324,+p1@Atmin
Mm9::chr8:13890233..13890300,-p1@2410022L05Rik
Mm9::chr8:73891395..73891439,+p4@Use1
Mm9::chrX:160346914..160346925,+p3@Ap1s2
Mm9::chrX:165758314..165758352,+p1@uc009uxy.1
Mm9::chrX:9240076..9240096,-p2@Dynlt3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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