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MCL coexpression mm9:462: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0005856;cytoskeleton;0.0250868850449667;68089,11461,13169!GO:0003779;actin binding;0.0250868850449667;68089,13169!GO:0005885;Arp2/3 protein complex;0.0250868850449667;68089!GO:0043232;intracellular non-membrane-bound organelle;0.0250868850449667;68089,11461,13169!GO:0043228;non-membrane-bound organelle;0.0250868850449667;68089,11461,13169!GO:0008092;cytoskeletal protein binding;0.0250868850449667;68089,13169!GO:0042995;cell projection;0.0254891151896614;68089,13169!GO:0016601;Rac protein signal transduction;0.0316022499170498;13169!GO:0030041;actin filament polymerization;0.0318311073828121;68089!GO:0051015;actin filament binding;0.0404209655317858;13169!GO:0005737;cytoplasm;0.0476799831454238;66460,68089,11461,13169!GO:0001726;ruffle;0.0476799831454238;13169!GO:0051258;protein polymerization;0.0480569440756613;68089!GO:0008154;actin polymerization and/or depolymerization;0.0480569440756613;68089!
|gostat_on_MCL_coexpression=GO:0005856;cytoskeleton;0.0250868850449667;68089,11461,13169!GO:0003779;actin binding;0.0250868850449667;68089,13169!GO:0005885;Arp2/3 protein complex;0.0250868850449667;68089!GO:0043232;intracellular non-membrane-bound organelle;0.0250868850449667;68089,11461,13169!GO:0043228;non-membrane-bound organelle;0.0250868850449667;68089,11461,13169!GO:0008092;cytoskeletal protein binding;0.0250868850449667;68089,13169!GO:0042995;cell projection;0.0254891151896614;68089,13169!GO:0016601;Rac protein signal transduction;0.0316022499170498;13169!GO:0030041;actin filament polymerization;0.0318311073828121;68089!GO:0051015;actin filament binding;0.0404209655317858;13169!GO:0005737;cytoplasm;0.0476799831454238;66460,68089,11461,13169!GO:0001726;ruffle;0.0476799831454238;13169!GO:0051258;protein polymerization;0.0480569440756613;68089!GO:0008154;actin polymerization and/or depolymerization;0.0480569440756613;68089!
}}
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Revision as of 12:42, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:5688483..5688563,+p1@Dbnl
Mm9::chr11:70465538..70465630,+p@chr11:70465538..70465630
+
Mm9::chr16:37882681..37882733,+p1@ENSMUST00000119947
Mm9::chr16:37883536..37883578,+p@chr16:37883536..37883578
+
Mm9::chr2:164286445..164286518,+p1@Sys1
Mm9::chr5:143665070..143665098,-p@chr5:143665070..143665098
-
Mm9::chr5:143665205..143665254,-p@chr5:143665205..143665254
-
Mm9::chr5:143665480..143665529,-p@chr5:143665480..143665529
-
Mm9::chr5:143666062..143666094,-p@chr5:143666062..143666094
-
Mm9::chr5:143666153..143666189,-p@chr5:143666153..143666189
-
Mm9::chr5:143666379..143666429,+p@chr5:143666379..143666429
+
Mm9::chr5:143666423..143666462,-p@chr5:143666423..143666462
-
Mm9::chr5:143667058..143667080,-p@chr5:143667058..143667080
-
Mm9::chr5:143668400..143668405,-p1@Actb
Mm9::chr5:38918434..38918452,-p@chr5:38918434..38918452
-
Mm9::chr6:113339103..113339107,+p1@Ttll3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005856cytoskeleton0.0250868850449667
GO:0003779actin binding0.0250868850449667
GO:0005885Arp2/3 protein complex0.0250868850449667
GO:0043232intracellular non-membrane-bound organelle0.0250868850449667
GO:0043228non-membrane-bound organelle0.0250868850449667
GO:0008092cytoskeletal protein binding0.0250868850449667
GO:0042995cell projection0.0254891151896614
GO:0016601Rac protein signal transduction0.0316022499170498
GO:0030041actin filament polymerization0.0318311073828121
GO:0051015actin filament binding0.0404209655317858
GO:0005737cytoplasm0.0476799831454238
GO:0001726ruffle0.0476799831454238
GO:0051258protein polymerization0.0480569440756613
GO:0008154actin polymerization and/or depolymerization0.0480569440756613



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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