Personal tools

MCL coexpression mm9:547: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.0135959477842065,-0.138594396949206,-0.114783307603926,-0.15976718913499,-0.168595327498933,-0.119028178847668,-0.0916456722839145,0.713017840360838,0.68377975932224,0.663224427158121,0.282801374248435,0.235362652562483,0.759220369418703,0.76905674813196,0.166285945641974,0.151863895560654,0.0219857680737819,0.462628770419735,0.478358143738433,0.360308024823273,0.388337308663464,-0.0145817670197876,-0.0274016110023418,-0.0172467635718528,-0.0750219300092514,-0.0896816302602605,-0.111196090096245,-0.0641244630571557,-0.0802579425102696,-0.0626400236757663,0.00690123260419792,-0.126363149491438,-0.0820321908224109,0.0422548092248028,-0.168595327498933,-0.168595327498933,-0.168595327498933,-0.118061546658157,-0.117869290060926,-0.111574402931703,-0.137685511802726,-0.139823678415635,-0.101000297629033,-0.130338538694016,-0.125420984984851,-0.157336032422978,-0.0985140426795262,-0.101622472371062,-0.132093828943837,-0.125361645502823,-0.106357966170056,-0.0340472478937456,0.204901009666437,0.730705728488436,0.685294381109589,-0.120323490788294,-0.0909007788653081,-0.154702615643506,0.105949344977052,0.0974170170597996,0.0599472238783528,-0.0700825663762679,-0.14734150224138,-0.0705461361154998,-0.0631407410261908,-0.0945968504201753,-0.0838037384440849,-0.0407654926495126,0.0100100237206347,-0.00366706242859486,-0.00992151543844518,0.183384273364387,0.199304440352327,0.105510463100452,0.0505553306664888,-0.0195976052760244,0.408504326888355,0.563259829545849,0.501444080306496,0.10276370359173,0.123597670559502,0.0835652640790034,0.258694281942454,0.248426423287217,0.336030412955734,0.31014706716358,0.255228863239998,0.195261055111927,-0.071552189543188,-0.0439027459076656,0.0284876806755498,0.066768238853983,-0.168595327498933,-0.0492995803916799,-0.0306150781818179,-0.0454153268153049,0.130678628225669,-0.0888099087324353,-0.105690191454763,-0.0925964977716596,0.0389285686321223,-0.0606848756735224,-0.0658997545093269,-0.0986678988367481,-0.117944068114468,-0.153506745375182,-0.124095527336418,0.142308514530789,0.609711729325638,0.0302271810199825,-0.020713378781779,-0.0492936232834949,-0.00477860110525621,-0.0145685966261534,0.0365724283314021,-0.0636599980148997,-0.0258607597092418,0.0313514364616243,0.0945397659724924,-0.00583934967927007,0.0967436205854668,0.119306662974176,-0.0185473454228377,0.336603109096767,0.358211623705718,0.00231235801913062,-0.0619862782716734,-0.0684097355084089,-0.0653889152748941,0.34222524119954,0.870666788071142,0.319432938940972,1.01399999641153,0.983651705654919,0.591785329679537,0.69636663278267,-0.0542609669949723,0.100441367891529,-0.0386099666885531,0.0226732703290672,-0.0519873175386235,-0.0443037088009845,-0.0238956610595838,-0.00473106016473878,0.0310892274611833,0.047774013345238,0.0418750995824858,0.109139083397922,-0.023800632732468,-0.0145979392821559,-0.027519956442749,-0.00316010240674395,0.00115070298153604,0.0601807229479768,0.0588370845587246,-0.00673034163527206,-0.115284415789662,-0.119441666816126,-0.128495513384566,-0.0590962073688204,-0.054624795834875,-0.0515833068379618,-0.0370268635758186,-0.0358586087324919,-0.096635642832464,-0.0698480412709041,-0.0605470121701281,0.00378487196464247,-0.0599514016180225,-0.0154758056686184,-0.0267360581688045,-0.014549836560479,0.01744741236848,-0.00168248424690385,0.800618082096882,0.160159291274023,0.0682227234367062,-0.065442494597074,-0.0527364091295577,-0.0626122485183749,-0.0392932457242325,0.0231607194288156,-0.0324423980918737,0.0160448925754011,-0.0121772747890918,-0.00500984931968972,0.0672233431480931,0.0374602746496278,0.0417798450327679,-0.0271176385686824,-0.0367724950905045,-0.0316379953691384,-0.0787188977003222,-0.0437238809457148,-0.103962905856102,-0.0587410905721046,-0.0640824855729571,-0.00664873613577879,0.00168954729432583,0.0298034356047164,0.0337807077927766,0.0173253427312989,-0.0363826849776885,-0.0549588017639963,-0.0331053532186319,-0.0516225930411385,0.001152205460489,-0.0216019070936085,-0.00438226471956129,-0.00140131719883365,0.000795056719091954,0.0102506464807765,-0.00904680568083357,0.0984715707374779,0.091245015521512,0.0462454067755823,0.0538245116970672,0.0443258970110769,0.142121680170176,-0.0449510926523237,-0.0677751226506102,-0.0498265341072764,-0.0908681133538942,0.0681220640447543,-0.0338052442798179,-0.0166998425194826,0.0909594746893566,0.0973095558871471,0.0762341598256473,0.0953580490180707,0.117086071748134,0.0727138702985424,0.0207939767415616,0.0734212412746769,0.0368478496595932,0.0466600020052431,0.256295698687553,0.279119542168861,-0.143524368213863,-0.0427781449965854,0.00676912371643951,-0.0172326912337393,0.0271034564831615,-0.0528956013151141,-0.0428957727881323,-0.0165044857346199,-0.010308158144832,-0.00241259688990358,0.0483553938122302,0.74695587959654,-0.0482564834544435,-0.0165469168169255,-0.00724220274519233,-0.0107928645753156,-0.0716483719578844,-0.0249056279355043,-0.0476147833144503,-0.0602119186711089,-0.0687816916278817,0.00393605161433515,0.010790999758098,-0.0166549186742192,0.0191446140703303,0.0248197593604238,-0.0723984711441439,-0.0701339491694262,0.183382093620392,-0.0590335126695425,-0.0895121044320994,-0.0540086592153601,0.00676324319776415,0.0749219901438985,0.0620935736727628,0.0552729387626272,0.0348422861987962,-0.0418494062626767,-0.0537864490359014,0.167643993725275,0.0720507102333034,0.0325351202700084,0.0484304753477434,0.0325486155535299,0.0139037637637176,0.225887467173584,0.238382305617861,0.0258184279975669,0.0547027910376837,0.143314492084319,0.291940698337669,0.256058502620246,0.012300099853489,-0.00485655602366217,0.00180937154937966,-0.0876336579619221,-0.0292756267545367,-0.0147257669743224,-0.0194079178939891,-0.00460031052117443,-0.0113113275934688,0.0162273455017519,0.0622797050439939,0.0149005424316035,0.0324617878148494,0.000858171304690354,-0.0668257585422815,-0.070425099319621,-0.0587952939281162,-0.0951995059560274,-0.0604240023312937,-0.0393743786637183,-0.0508468037248631,-0.0909865176147416,-0.034945638934184,-0.082849965466808,-0.0939689304866866,0.805192647415641,0.104696976016927,0.179711017660695,0.308668413154854,0.522476012509324,0.6655399857011,0.732655648618374,0.739831727560302,0.748422078186602,0.780680744617149,0.836470323415936,0.866028003990881,0.869394601278265,0.974991941407502,0.0517520354668637,-0.109344600443367,-0.0940230454077949,-0.111877041181764,0.00226349467001217,0.0170659483780318,-0.0581181303608471,-0.0165099045459183,-0.0201382034259129,0.920081795298961,0.914404355602251,0.929758945542696,0.876314839699937,0.944123150078483,1.07530207468387,1.0256510530811,0.958827205534325,1.05106669610731,0.997634183549888,-0.0484018870148388,0.0101187134314696,0.0100965356162661,0.0692472982414479,0.018420830358831,0.0249479894192685,0.0262104482567849,0.0923707562291405,0.0465977809970015,0.00633052222349018,0.0792458908487984,0.0491959900046154,0.0648829293594259,0.0545577514962687,0.0477228075272283,0.108838280346697,0.0723695674894408,0.0814462452762186,0.0891905933204821,0.0567355311980099,0.0353677460919375,0.0417275048237982,0.063716725164738,0.0733605068049353,0.0777301323373701,0.0554371895151279,0.0663482416619918,0.0448042396977029,0.0750643460258288,0.0388456673739627,0.086578421673241,0.0590046363000585,0.0909610731953111,0.0476840004668382,0.0691476766943578,0.0961933220351303,0.0994158477399105,0.154264323594314,0.0664181406374849,0.086119747487341,0.0532916829386934
|coexpression_dpi_cluster_scores_mean=-0.0135959477842065,-0.138594396949206,-0.114783307603926,-0.15976718913499,-0.168595327498933,-0.119028178847668,-0.0916456722839145,0.713017840360838,0.68377975932224,0.663224427158121,0.282801374248435,0.235362652562483,0.759220369418703,0.76905674813196,0.166285945641974,0.151863895560654,0.0219857680737819,0.462628770419735,0.478358143738433,0.360308024823273,0.388337308663464,-0.0145817670197876,-0.0274016110023418,-0.0172467635718528,-0.0750219300092514,-0.0896816302602605,-0.111196090096245,-0.0641244630571557,-0.0802579425102696,-0.0626400236757663,0.00690123260419792,-0.126363149491438,-0.0820321908224109,0.0422548092248028,-0.168595327498933,-0.168595327498933,-0.168595327498933,-0.118061546658157,-0.117869290060926,-0.111574402931703,-0.137685511802726,-0.139823678415635,-0.101000297629033,-0.130338538694016,-0.125420984984851,-0.157336032422978,-0.0985140426795262,-0.101622472371062,-0.132093828943837,-0.125361645502823,-0.106357966170056,-0.0340472478937456,0.204901009666437,0.730705728488436,0.685294381109589,-0.120323490788294,-0.0909007788653081,-0.154702615643506,0.105949344977052,0.0974170170597996,0.0599472238783528,-0.0700825663762679,-0.14734150224138,-0.0705461361154998,-0.0631407410261908,-0.0945968504201753,-0.0838037384440849,-0.0407654926495126,0.0100100237206347,-0.00366706242859486,-0.00992151543844518,0.183384273364387,0.199304440352327,0.105510463100452,0.0505553306664888,-0.0195976052760244,0.408504326888355,0.563259829545849,0.501444080306496,0.10276370359173,0.123597670559502,0.0835652640790034,0.258694281942454,0.248426423287217,0.336030412955734,0.31014706716358,0.255228863239998,0.195261055111927,-0.071552189543188,-0.0439027459076656,0.0284876806755498,0.066768238853983,-0.168595327498933,-0.0492995803916799,-0.0306150781818179,-0.0454153268153049,0.130678628225669,-0.0888099087324353,-0.105690191454763,-0.0925964977716596,0.0389285686321223,-0.0606848756735224,-0.0658997545093269,-0.0986678988367481,-0.117944068114468,-0.153506745375182,-0.124095527336418,0.142308514530789,0.609711729325638,0.0302271810199825,-0.020713378781779,-0.0492936232834949,-0.00477860110525621,-0.0145685966261534,0.0365724283314021,-0.0636599980148997,-0.0258607597092418,0.0313514364616243,0.0945397659724924,-0.00583934967927007,0.0967436205854668,0.119306662974176,-0.0185473454228377,0.336603109096767,0.358211623705718,0.00231235801913062,-0.0619862782716734,-0.0684097355084089,-0.0653889152748941,0.34222524119954,0.870666788071142,0.319432938940972,1.01399999641153,0.983651705654919,0.591785329679537,0.69636663278267,-0.0542609669949723,0.100441367891529,-0.0386099666885531,0.0226732703290672,-0.0519873175386235,-0.0443037088009845,-0.0238956610595838,-0.00473106016473878,0.0310892274611833,0.047774013345238,0.0418750995824858,0.109139083397922,-0.023800632732468,-0.0145979392821559,-0.027519956442749,-0.00316010240674395,0.00115070298153604,0.0601807229479768,0.0588370845587246,-0.00673034163527206,-0.115284415789662,-0.119441666816126,-0.128495513384566,-0.0590962073688204,-0.054624795834875,-0.0515833068379618,-0.0370268635758186,-0.0358586087324919,-0.096635642832464,-0.0698480412709041,-0.0605470121701281,0.00378487196464247,-0.0599514016180225,-0.0154758056686184,-0.0267360581688045,-0.014549836560479,0.01744741236848,-0.00168248424690385,0.800618082096882,0.160159291274023,0.0682227234367062,-0.065442494597074,-0.0527364091295577,-0.0626122485183749,-0.0392932457242325,0.0231607194288156,-0.0324423980918737,0.0160448925754011,-0.0121772747890918,-0.00500984931968972,0.0672233431480931,0.0374602746496278,0.0417798450327679,-0.0271176385686824,-0.0367724950905045,-0.0316379953691384,-0.0787188977003222,-0.0437238809457148,-0.103962905856102,-0.0587410905721046,-0.0640824855729571,-0.00664873613577879,0.00168954729432583,0.0298034356047164,0.0337807077927766,0.0173253427312989,-0.0363826849776885,-0.0549588017639963,-0.0331053532186319,-0.0516225930411385,0.001152205460489,-0.0216019070936085,-0.00438226471956129,-0.00140131719883365,0.000795056719091954,0.0102506464807765,-0.00904680568083357,0.0984715707374779,0.091245015521512,0.0462454067755823,0.0538245116970672,0.0443258970110769,0.142121680170176,-0.0449510926523237,-0.0677751226506102,-0.0498265341072764,-0.0908681133538942,0.0681220640447543,-0.0338052442798179,-0.0166998425194826,0.0909594746893566,0.0973095558871471,0.0762341598256473,0.0953580490180707,0.117086071748134,0.0727138702985424,0.0207939767415616,0.0734212412746769,0.0368478496595932,0.0466600020052431,0.256295698687553,0.279119542168861,-0.143524368213863,-0.0427781449965854,0.00676912371643951,-0.0172326912337393,0.0271034564831615,-0.0528956013151141,-0.0428957727881323,-0.0165044857346199,-0.010308158144832,-0.00241259688990358,0.0483553938122302,0.74695587959654,-0.0482564834544435,-0.0165469168169255,-0.00724220274519233,-0.0107928645753156,-0.0716483719578844,-0.0249056279355043,-0.0476147833144503,-0.0602119186711089,-0.0687816916278817,0.00393605161433515,0.010790999758098,-0.0166549186742192,0.0191446140703303,0.0248197593604238,-0.0723984711441439,-0.0701339491694262,0.183382093620392,-0.0590335126695425,-0.0895121044320994,-0.0540086592153601,0.00676324319776415,0.0749219901438985,0.0620935736727628,0.0552729387626272,0.0348422861987962,-0.0418494062626767,-0.0537864490359014,0.167643993725275,0.0720507102333034,0.0325351202700084,0.0484304753477434,0.0325486155535299,0.0139037637637176,0.225887467173584,0.238382305617861,0.0258184279975669,0.0547027910376837,0.143314492084319,0.291940698337669,0.256058502620246,0.012300099853489,-0.00485655602366217,0.00180937154937966,-0.0876336579619221,-0.0292756267545367,-0.0147257669743224,-0.0194079178939891,-0.00460031052117443,-0.0113113275934688,0.0162273455017519,0.0622797050439939,0.0149005424316035,0.0324617878148494,0.000858171304690354,-0.0668257585422815,-0.070425099319621,-0.0587952939281162,-0.0951995059560274,-0.0604240023312937,-0.0393743786637183,-0.0508468037248631,-0.0909865176147416,-0.034945638934184,-0.082849965466808,-0.0939689304866866,0.805192647415641,0.104696976016927,0.179711017660695,0.308668413154854,0.522476012509324,0.6655399857011,0.732655648618374,0.739831727560302,0.748422078186602,0.780680744617149,0.836470323415936,0.866028003990881,0.869394601278265,0.974991941407502,0.0517520354668637,-0.109344600443367,-0.0940230454077949,-0.111877041181764,0.00226349467001217,0.0170659483780318,-0.0581181303608471,-0.0165099045459183,-0.0201382034259129,0.920081795298961,0.914404355602251,0.929758945542696,0.876314839699937,0.944123150078483,1.07530207468387,1.0256510530811,0.958827205534325,1.05106669610731,0.997634183549888,-0.0484018870148388,0.0101187134314696,0.0100965356162661,0.0692472982414479,0.018420830358831,0.0249479894192685,0.0262104482567849,0.0923707562291405,0.0465977809970015,0.00633052222349018,0.0792458908487984,0.0491959900046154,0.0648829293594259,0.0545577514962687,0.0477228075272283,0.108838280346697,0.0723695674894408,0.0814462452762186,0.0891905933204821,0.0567355311980099,0.0353677460919375,0.0417275048237982,0.063716725164738,0.0733605068049353,0.0777301323373701,0.0554371895151279,0.0663482416619918,0.0448042396977029,0.0750643460258288,0.0388456673739627,0.086578421673241,0.0590046363000585,0.0909610731953111,0.0476840004668382,0.0691476766943578,0.0961933220351303,0.0994158477399105,0.154264323594314,0.0664181406374849,0.086119747487341,0.0532916829386934
|coexpression_dpi_cluster_scores_median=0,0,-0.073185417993707,-0.0664968100861445,-0.073185417993707,-0.0664968100861445,-0.0322511828455994,0.63017699464168,0.612503263481101,0.492282644971063,0.0686377264886741,0.0931822237755937,0.73334135059608,0.769647913948888,0.124865908594952,0.0800761525331175,0,0.39904824385717,0.441196998233302,0.356631716265397,0.330068842321848,0,0,0,-0.0664968100861445,-0.0664968100861445,-0.0664968100861445,0,0,0,0.0137900017896885,-0.0664968100861445,0,0,-0.073185417993707,-0.073185417993707,-0.073185417993707,-0.0664968100861445,-0.0443865454593048,-0.0664968100861445,-0.0664968100861445,-0.0664968100861445,0,-0.0664968100861445,-0.0664968100861445,-0.0664968100861445,0,-0.0664968100861445,-0.073185417993707,-0.0664968100861445,-0.073185417993707,0,0.22301034595168,0.709664369742131,0.701837767320913,-0.0664968100861445,-0.0664968100861445,-0.073185417993707,0.0800187930544913,0,0,0,-0.0664968100861445,0,0,-0.00845475024775777,0,0,0.0153468885873129,0,0,0.0485737918944041,0.0866689030825281,0.0951629323478916,0.0526735877826363,0,0.426660988581769,0.543636862963727,0.506294446975568,0.0720977632780824,0.0388303979576708,0.0806771570224206,0.126172653677815,0.193893011938994,0.302511883110575,0.174380163652932,0.108816382318513,0,-0.0347950665036974,0,0,0,-0.073185417993707,0,0,0,0.0570741246689917,-0.00270164947293217,0,-0.0622371567458284,0,0,-0.0559502539139172,-0.0664968100861445,-0.0664968100861445,-0.0664968100861445,-0.0664968100861445,0.0661784216363349,0.555019297816809,0,0,-0.0529049056777957,0,0,0,-0.0150870332362297,0,0,0,0,0.0578243571638841,0.0813775139640018,0,0.20018311764962,0.192985747462538,0,0,0,0,0.263288505243389,0.841829045324691,0.221262900807985,0.945571701020876,0.871910835197123,0.516623742860701,0.659850413014491,0,0.096497738357694,0,0,0,0,0,0,0,0,0,0.0999233952154288,0,0,0,0,0,0.0283438060033395,0.00808342753585524,0,0,-0.0664968100861445,0,0,0,0,0,-0.000794815628394133,-0.0664968100861445,0,0,0,0,0,0,0,0,0,0.736415644119996,0.0436592762741156,0,0,0,0,0,0,0,0,0,0,0,0,0.00416943540730146,0,0,0,0,0,-0.073185417993707,0,0,0,0.00225555216490533,0,0.0454091062985393,0.0505333231410966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0,-0.0664968100861445,0.0240580161208002,0,0,0.0175876887384806,0.0151234260606243,0,0.0499232477380058,0.0691813633419548,0.000186264639655986,0,0,0,0.10582914506561,0.215426671903518,0.231283527662417,-0.0664968100861445,0,0,0,0,0,0,0,0,0,0,0.740244105377598,0.0297210748327054,0,0,0,0,0,0,-0.0644741249970257,-0.0330878053118361,0,0,0,0,0,0,0,0.0607504412959853,-0.00128092584534742,-0.0203535224389396,-0.00680334049450981,0,0,0,0,0,0,0,0.123777349320174,0,0.0350486221205408,0,0,0,0.0797423902462683,0.179727725901961,0,0.000604219466160349,0.0600475407900256,0.226205675252187,0.0904399347774847,0,0,0,-0.0664968100861445,0,0,0,0,-0.0156507747310067,0,0,0,0,0,0,-0.00598158323780115,0,-0.0664968100861445,0,0,0,-0.0256464284867395,0,-0.0664968100861445,0,0.577716528758058,0.0746301149059493,0.116651858992906,0.217379731275612,0.435227895770103,0.533410302655502,0.666851121279541,0.643142551085112,0.640576841823864,0.607269713251688,0.546623423443437,0.62491193990439,0.661273938096574,0.842654289789156,0.0155637040040324,-0.0664968100861445,0,-0.0664968100861445,0,0,0,0,0,0.858071992876192,0.897895201718068,0.922889198416415,0.846019093523371,0.85526120858043,1.06354030570316,0.994626549441404,0.795481437547041,1.00272092044668,0.961741525452248,-0.0303000064361126,0,0,0.015704996770122,0,0,0,0.0791815268685765,0,0,0.0469196982823146,0.00185993252200252,0.0388749848471105,0.0269518943326477,0,0.10267595378004,0.0599153138495795,0.0766073954291401,0.0710577003851044,0.0215172837996976,0,0.0587383680815004,0.0905395521190384,0.0589368614163519,0.0563130075988207,0.0352754493378881,0.0494215051328702,0.0226239044499554,0.0696179386371438,0,0.0924644954689594,0,0.0824853913608998,0,0.00342102741752884,0.0303473859698722,0.091291089277545,0.155257708002722,0.00283147016528354,0.0865703124974023,0.0257130909503162
|gostat_on_MCL_coexpression=GO:0001668;phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;0.0427327014737303;20975!
|gostat_on_MCL_coexpression=GO:0001668;phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;0.0427327014737303;20975!
}}
}}

Revision as of 12:43, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:115910474..115910570,-p2@Kcnmb4
Mm9::chr10:5151728..5151757,+p5@Syne1
Mm9::chr10:5151777..5151840,+p1@Syne1
Mm9::chr11:75346593..75346610,-p@chr11:75346593..75346610
-
Mm9::chr17:5975802..5975830,+p3@Synj2
Mm9::chr18:33098952..33099051,+p1@Camk4
Mm9::chr18:39679069..39679079,-p@chr18:39679069..39679079
-
Mm9::chr2:117168567..117168632,-p1@Rasgrp1
Mm9::chr2:117168636..117168645,-p4@Rasgrp1
Mm9::chr2:117168651..117168664,-p2@Rasgrp1
Mm9::chr2:117168685..117168702,-p3@Rasgrp1
Mm9::chr2:158493814..158493853,+p@chr2:158493814..158493853
+
Mm9::chr9:112088285..112088295,-p33@Arpp21


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001668phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity0.0427327014737303



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:547&oldid=2149833"