Personal tools

MCL coexpression mm9:945: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0199161833796669,0.0146327561494068,0.0224121667714151,-0.0233694122478416,-0.0270075555301679,-0.00280075044844639,-0.0202185044980429,0.168592781758017,0.0378969028522196,0.040494202930102,0.0065980802219769,-0.0224965271133831,0.137115264885966,0.206120168729999,-0.0334431322102356,0.00518214443665094,-0.0202592481442423,0.0845277382129119,0.0766313246074539,0.0939347583296886,0.0230792530925248,0.25973345701795,0.161892656942623,0.0154846283334825,0.0392352343985781,-0.0244177799951386,-0.0296054462948445,-0.00936250042743353,-0.0315646424540027,-0.0146913687095055,-0.0291257381787345,-0.0223606327205174,-0.0490513707846046,-0.0490513707846046,-0.0215006403664444,-0.0334692197004062,-0.0056347251377378,0.61870657657879,0.467217486164501,0.513359083417022,0.529976729730064,0.450125507967113,0.44236481157284,0.0192346265503258,0.0262656275109857,0,0.0780187596410971,-0.00902981799067832,0.0327805951324175,0.0250601815338775,-0.0202474236751639,0.0244833110753231,0.024982567555016,0.2306996713927,0.378304045541888,-0.00557208527189875,0.0201658223531784,-0.0105784313936707,-0.00590665103037489,0.0025476149165496,-0.0490513707846046,0.0268751557640215,0.00642667979557631,0.0849283435457479,0.0696890137105756,0.0808591384024221,0.033736697161385,0.048170810379493,-0.0104302605887318,-0.0305911419177231,-0.0159108061975961,0.0051479774905808,0.0103678760737925,-0.00871150835664475,-0.0211819689445578,-0.0490513707846046,-0.00874401096770804,0.0135927621473589,-0.00941767959469791,-0.000389012866316741,-0.0192359832473212,0.00203670002401359,-0.0249676878141096,-0.0248147442922304,0.00448129075529102,-0.0067813178610753,-0.0115149394316551,0.00441674051383757,-0.0219992665576197,-0.0347130642902272,0.0065597340888588,0.0202032870236152,0.0459995483931706,-0.0490513707846046,-0.0490513707846046,-0.0490513707846046,0.0242426146790903,0.0407172801097923,0.00195139040644192,0.018542620071277,0.0236620274485244,-0.00423183622404863,0.0884461354149006,-0.0490513707846046,-0.0218832153563665,0.00615911372185515,-0.026840394348107,0.0198261818978391,0.203965011103051,0.023415062139485,-0.0263046393942861,0.0129134918499779,0.00311823318453611,-0.0185596449630406,0.0285293250835801,0.000864551166782065,0.0321243658392241,0.0340254693650278,0.0853348944729104,0.0233195085746835,0.00167859703341389,0.0524053233248459,0.0352814207156947,-9.83982890091217e-05,0.0122718623672445,-0.005815892252042,0.0891978778612077,0.0517136998590869,0.0596325442863862,-0.00628988058163788,0.0226301593998731,-0.0147937554617164,0.00897380930848357,0.0236051294307071,-0.00510755210401474,0.00654503223412487,0.0282963971088555,0.0801240989169524,0.0266477565170145,-0.029981553813016,-0.0110862438229075,-0.00750892386047599,-0.00477737008088846,-0.0185624037328588,0.00626837295938882,-0.00131611652696831,-0.0248339320290001,0.0202905614359646,-0.00934985889373291,-0.031636861098067,0.00605265016848433,0.0100936393722155,-0.0250468748753144,0.00569242432611843,-0.00539914161966753,-0.01155384623565,0.0124849877816203,0.0338272261141741,0.0492476807621231,-0.000408260214679767,-0.00136333311725865,-0.00477738157043589,0.00863515504152777,0.006275806456536,0.0134050405139893,0.0161781272493611,-0.00947400677606184,0.0303856588304199,0.000277820427213235,-0.00352144411539726,0.0153018314935542,0.0558903118885984,0.0176232827003822,0.0608133152756287,-0.0047460433402665,0.0116299519403999,0.057725926045122,-0.0363136388605239,-0.0155624610948925,-0.028341186899532,-0.00410336424766686,-0.00125905443996154,-0.0104043603396683,-0.0127656469789985,-0.000994039861835675,0.00379265750401287,0.0182211164763319,-0.0115644308956537,0.00267006176660624,0.0205695447605696,0.00820812363686099,0.00819768996050693,-0.0184032768648659,-0.0138089666005282,-0.00807846022903779,0.00342680150111166,-0.0312564042465688,0.00862970072751086,0.00107362842240681,0.0043072548991727,-0.0048842287699456,-0.0152520356071599,-0.0349567892725927,-0.0129203824161501,-0.0238877599407807,-0.0380404706359066,-0.0167983620392151,0.0210255059414427,-0.00447335427355911,0.024510063493942,0.017752852578937,0.0169705242016434,-0.000679238020806293,-0.0188492866492465,0.0278157449567288,-0.0184321452641865,-0.0196864438520471,0.00930289587128018,0.075134854472549,-0.0184250727663702,-0.0166970301543403,-0.0124092656653355,0.00370731842184951,0.00550917484962644,-0.0127365395720187,0.0424267053599581,0.0557395756416944,0.0185601059544584,-0.0003254819795484,0.026452101988517,0.0482494303786077,0.0460503919049584,0.0437277681944839,0.00347852851109392,0.00998936710118681,-0.00867718245744379,0.00618125987227214,-0.0201409298268025,0.0319036944167211,0.0266070602182959,-0.00473900666999154,0.00201582779816165,0.000863786820445654,-0.00637591379964341,0.00196994505154421,0.00483811091219134,-0.00589357462703205,-0.0240644389476089,0.00242530806184501,0.014921507050414,0.0103559615397813,0.0241178184903031,0.0180705562542485,0.00712709083485532,-0.00319129352754463,-0.00590654275553221,-0.0233789283667305,-0.0185346647182548,-0.023856119313,-0.034498851287086,0.0117953971278901,-0.000314066445533085,0.0130472716431997,-0.0046882925172612,-0.0490513707846046,-0.0105781307984333,-0.0208593075312404,0.00324768233609849,-0.0178663514958038,-0.0154397063789961,0.00969004449654626,-0.00954949433087866,0.000819677377491737,0.022560258087002,0.00453398854831652,0.0227577651738574,-0.0214860440733478,-0.011761445685498,0.0275440450506858,0.00454318177618965,0.00792714093503416,0.0129580878218139,0.00679001033499791,0.000329516628712847,0.0996140101309869,0.0274910119440415,0.0170649823395635,0.0107392294517141,0.0405196266770215,0.0512605614143537,0.105377132591624,0.110197221741034,0.0692911436477522,0.00892296203343065,-0.00858876996550059,-0.00575928348158746,0.00163936172954808,-0.000104698129882196,0.00173604998373119,-0.00609493608406475,0.0215250770787829,-0.0364294509555506,-0.00708066313518829,-0.0228171316228407,0.0581198832981619,0.0171250044962681,0.000454498400647616,0.00188544109277531,0.0206140954645287,-0.00667729185258126,0.0225475684711141,0.00472125864972511,0.0192143752896406,0.036837844799824,0.00543275756669906,0.44943545488726,0.0384220805898631,0.13734090092017,0.229323869706377,0.266055963253118,0.420778273703661,0.420253712224778,0.382716936244555,0.404326435198909,0.56841157065254,0.483004056310245,0.388079096939652,0.494184054172214,0.713445474787485,0.00318271577543019,-0.021343369301108,-0.00708704361023456,-0.00686416326953973,0.0189308803786387,0.0100603638302575,0.0165810619061841,-0.0041618492614402,0.000793447234127602,-0.0247456868294565,-0.00195700018483324,-0.0490513707846046,0.017478325911967,0.0115794299447224,0.0438124665034655,0.0310722823281696,-0.00264563243751513,0.0151958652217244,-0.0264009717624827,-0.0194051884563686,-0.0490513707846046,-0.0023025376005505,0.00594697309681407,0.0147335681865911,-0.00414536574764201,0.00641464783393622,-0.00536228929202305,0.0029161763720533,0.0231303550317594,-0.0367867249894161,0.0142022381935249,0.00265102728224312,-0.00233596942901141,0.00101714531835649,-0.0279047753013316,-0.00443519649806026,0.00162276810627364,-0.0164181535300657,-0.00325339811100575,-0.00217400594604308,0.00365508474984538,0.0167765877879443,0.0112157800472026,-0.0185825010625051,0.00833007194629324,0.00377957553627925,0.0119331509128995,-0.0254980150894471,-0.0248710603537286,-0.00467371958578258,-0.0092008980005773,-0.0165883394409286,-0.00528261519751469,0.0151671111537881,-0.0114431914623658,-0.0282156723280079,0.0563551825886615,0.0279932373487042,0.0437757542991309,0.0153797662331349
|coexpression_dpi_cluster_scores_mean=0.0199161833796669,0.0146327561494068,0.0224121667714151,-0.0233694122478416,-0.0270075555301679,-0.00280075044844639,-0.0202185044980429,0.168592781758017,0.0378969028522196,0.040494202930102,0.0065980802219769,-0.0224965271133831,0.137115264885966,0.206120168729999,-0.0334431322102356,0.00518214443665094,-0.0202592481442423,0.0845277382129119,0.0766313246074539,0.0939347583296886,0.0230792530925248,0.25973345701795,0.161892656942623,0.0154846283334825,0.0392352343985781,-0.0244177799951386,-0.0296054462948445,-0.00936250042743353,-0.0315646424540027,-0.0146913687095055,-0.0291257381787345,-0.0223606327205174,-0.0490513707846046,-0.0490513707846046,-0.0215006403664444,-0.0334692197004062,-0.0056347251377378,0.61870657657879,0.467217486164501,0.513359083417022,0.529976729730064,0.450125507967113,0.44236481157284,0.0192346265503258,0.0262656275109857,0,0.0780187596410971,-0.00902981799067832,0.0327805951324175,0.0250601815338775,-0.0202474236751639,0.0244833110753231,0.024982567555016,0.2306996713927,0.378304045541888,-0.00557208527189875,0.0201658223531784,-0.0105784313936707,-0.00590665103037489,0.0025476149165496,-0.0490513707846046,0.0268751557640215,0.00642667979557631,0.0849283435457479,0.0696890137105756,0.0808591384024221,0.033736697161385,0.048170810379493,-0.0104302605887318,-0.0305911419177231,-0.0159108061975961,0.0051479774905808,0.0103678760737925,-0.00871150835664475,-0.0211819689445578,-0.0490513707846046,-0.00874401096770804,0.0135927621473589,-0.00941767959469791,-0.000389012866316741,-0.0192359832473212,0.00203670002401359,-0.0249676878141096,-0.0248147442922304,0.00448129075529102,-0.0067813178610753,-0.0115149394316551,0.00441674051383757,-0.0219992665576197,-0.0347130642902272,0.0065597340888588,0.0202032870236152,0.0459995483931706,-0.0490513707846046,-0.0490513707846046,-0.0490513707846046,0.0242426146790903,0.0407172801097923,0.00195139040644192,0.018542620071277,0.0236620274485244,-0.00423183622404863,0.0884461354149006,-0.0490513707846046,-0.0218832153563665,0.00615911372185515,-0.026840394348107,0.0198261818978391,0.203965011103051,0.023415062139485,-0.0263046393942861,0.0129134918499779,0.00311823318453611,-0.0185596449630406,0.0285293250835801,0.000864551166782065,0.0321243658392241,0.0340254693650278,0.0853348944729104,0.0233195085746835,0.00167859703341389,0.0524053233248459,0.0352814207156947,-9.83982890091217e-05,0.0122718623672445,-0.005815892252042,0.0891978778612077,0.0517136998590869,0.0596325442863862,-0.00628988058163788,0.0226301593998731,-0.0147937554617164,0.00897380930848357,0.0236051294307071,-0.00510755210401474,0.00654503223412487,0.0282963971088555,0.0801240989169524,0.0266477565170145,-0.029981553813016,-0.0110862438229075,-0.00750892386047599,-0.00477737008088846,-0.0185624037328588,0.00626837295938882,-0.00131611652696831,-0.0248339320290001,0.0202905614359646,-0.00934985889373291,-0.031636861098067,0.00605265016848433,0.0100936393722155,-0.0250468748753144,0.00569242432611843,-0.00539914161966753,-0.01155384623565,0.0124849877816203,0.0338272261141741,0.0492476807621231,-0.000408260214679767,-0.00136333311725865,-0.00477738157043589,0.00863515504152777,0.006275806456536,0.0134050405139893,0.0161781272493611,-0.00947400677606184,0.0303856588304199,0.000277820427213235,-0.00352144411539726,0.0153018314935542,0.0558903118885984,0.0176232827003822,0.0608133152756287,-0.0047460433402665,0.0116299519403999,0.057725926045122,-0.0363136388605239,-0.0155624610948925,-0.028341186899532,-0.00410336424766686,-0.00125905443996154,-0.0104043603396683,-0.0127656469789985,-0.000994039861835675,0.00379265750401287,0.0182211164763319,-0.0115644308956537,0.00267006176660624,0.0205695447605696,0.00820812363686099,0.00819768996050693,-0.0184032768648659,-0.0138089666005282,-0.00807846022903779,0.00342680150111166,-0.0312564042465688,0.00862970072751086,0.00107362842240681,0.0043072548991727,-0.0048842287699456,-0.0152520356071599,-0.0349567892725927,-0.0129203824161501,-0.0238877599407807,-0.0380404706359066,-0.0167983620392151,0.0210255059414427,-0.00447335427355911,0.024510063493942,0.017752852578937,0.0169705242016434,-0.000679238020806293,-0.0188492866492465,0.0278157449567288,-0.0184321452641865,-0.0196864438520471,0.00930289587128018,0.075134854472549,-0.0184250727663702,-0.0166970301543403,-0.0124092656653355,0.00370731842184951,0.00550917484962644,-0.0127365395720187,0.0424267053599581,0.0557395756416944,0.0185601059544584,-0.0003254819795484,0.026452101988517,0.0482494303786077,0.0460503919049584,0.0437277681944839,0.00347852851109392,0.00998936710118681,-0.00867718245744379,0.00618125987227214,-0.0201409298268025,0.0319036944167211,0.0266070602182959,-0.00473900666999154,0.00201582779816165,0.000863786820445654,-0.00637591379964341,0.00196994505154421,0.00483811091219134,-0.00589357462703205,-0.0240644389476089,0.00242530806184501,0.014921507050414,0.0103559615397813,0.0241178184903031,0.0180705562542485,0.00712709083485532,-0.00319129352754463,-0.00590654275553221,-0.0233789283667305,-0.0185346647182548,-0.023856119313,-0.034498851287086,0.0117953971278901,-0.000314066445533085,0.0130472716431997,-0.0046882925172612,-0.0490513707846046,-0.0105781307984333,-0.0208593075312404,0.00324768233609849,-0.0178663514958038,-0.0154397063789961,0.00969004449654626,-0.00954949433087866,0.000819677377491737,0.022560258087002,0.00453398854831652,0.0227577651738574,-0.0214860440733478,-0.011761445685498,0.0275440450506858,0.00454318177618965,0.00792714093503416,0.0129580878218139,0.00679001033499791,0.000329516628712847,0.0996140101309869,0.0274910119440415,0.0170649823395635,0.0107392294517141,0.0405196266770215,0.0512605614143537,0.105377132591624,0.110197221741034,0.0692911436477522,0.00892296203343065,-0.00858876996550059,-0.00575928348158746,0.00163936172954808,-0.000104698129882196,0.00173604998373119,-0.00609493608406475,0.0215250770787829,-0.0364294509555506,-0.00708066313518829,-0.0228171316228407,0.0581198832981619,0.0171250044962681,0.000454498400647616,0.00188544109277531,0.0206140954645287,-0.00667729185258126,0.0225475684711141,0.00472125864972511,0.0192143752896406,0.036837844799824,0.00543275756669906,0.44943545488726,0.0384220805898631,0.13734090092017,0.229323869706377,0.266055963253118,0.420778273703661,0.420253712224778,0.382716936244555,0.404326435198909,0.56841157065254,0.483004056310245,0.388079096939652,0.494184054172214,0.713445474787485,0.00318271577543019,-0.021343369301108,-0.00708704361023456,-0.00686416326953973,0.0189308803786387,0.0100603638302575,0.0165810619061841,-0.0041618492614402,0.000793447234127602,-0.0247456868294565,-0.00195700018483324,-0.0490513707846046,0.017478325911967,0.0115794299447224,0.0438124665034655,0.0310722823281696,-0.00264563243751513,0.0151958652217244,-0.0264009717624827,-0.0194051884563686,-0.0490513707846046,-0.0023025376005505,0.00594697309681407,0.0147335681865911,-0.00414536574764201,0.00641464783393622,-0.00536228929202305,0.0029161763720533,0.0231303550317594,-0.0367867249894161,0.0142022381935249,0.00265102728224312,-0.00233596942901141,0.00101714531835649,-0.0279047753013316,-0.00443519649806026,0.00162276810627364,-0.0164181535300657,-0.00325339811100575,-0.00217400594604308,0.00365508474984538,0.0167765877879443,0.0112157800472026,-0.0185825010625051,0.00833007194629324,0.00377957553627925,0.0119331509128995,-0.0254980150894471,-0.0248710603537286,-0.00467371958578258,-0.0092008980005773,-0.0165883394409286,-0.00528261519751469,0.0151671111537881,-0.0114431914623658,-0.0282156723280079,0.0563551825886615,0.0279932373487042,0.0437757542991309,0.0153797662331349
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0997657817140535,0,0,0,0,0.0982568750807739,0.217602888481368,0,0,0,0.0636076933539527,0.105247439647798,0.0768144049304335,0.0177235328243841,0.214482665302248,0.0503919447329045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.594361763569348,0.46647992698749,0.490533640609026,0.483535552624117,0.429104149209262,0.29469118667486,0,0,0,0,0,0,0,0,0,0,0.236880264493592,0.424769744114859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215439054861599,0,0,0,0,0,0,0,0,0.0222884481062576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0509235292940968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0239809638088447,0,0,0,0.0296301996785983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0,0,0,0,0,0.0635717028550276,0,0,0,0.0345906816709774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0685090053637401,0,0,0,0,0,0,0.0284431781081945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461808563544067,0,0.133065400900482,0.250304078488806,0.275693299455397,0.414524451978163,0.456469514992315,0.375575072675259,0.404922657007971,0.642174371762068,0.532473451120907,0.334598659850418,0.472586371041351,0.721454682928727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0632616918239906,0,0,0
|gostat_on_MCL_coexpression=GO:0030338;CMP-N-acetylneuraminate monooxygenase activity;0.00416358505650466;12763!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.00416358505650466;12763!GO:0046381;CMP-N-acetylneuraminate metabolic process;0.00416358505650466;12763!GO:0006054;N-acetylneuraminate metabolic process;0.00780608038529814;12763!GO:0009225;nucleotide-sugar metabolic process;0.00858527691340211;12763!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00858527691340211;12763!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00858527691340211;12763!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00858527691340211;12763!GO:0051537;2 iron, 2 sulfur cluster binding;0.00971183807795139;12763!GO:0006040;amino sugar metabolic process;0.0149798725366914;12763!GO:0051536;iron-sulfur cluster binding;0.0223541333869878;12763!GO:0051540;metal cluster binding;0.0223541333869878;12763!GO:0015078;hydrogen ion transmembrane transporter activity;0.0427151651692191;12763!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0427151651692191;12763!GO:0004497;monooxygenase activity;0.0479560692337963;12763!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.0479560692337963;12763!GO:0022890;inorganic cation transmembrane transporter activity;0.0479560692337963;12763!GO:0046914;transition metal ion binding;0.0492165645382467;68718,12763!
|gostat_on_MCL_coexpression=GO:0030338;CMP-N-acetylneuraminate monooxygenase activity;0.00416358505650466;12763!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.00416358505650466;12763!GO:0046381;CMP-N-acetylneuraminate metabolic process;0.00416358505650466;12763!GO:0006054;N-acetylneuraminate metabolic process;0.00780608038529814;12763!GO:0009225;nucleotide-sugar metabolic process;0.00858527691340211;12763!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00858527691340211;12763!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00858527691340211;12763!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00858527691340211;12763!GO:0051537;2 iron, 2 sulfur cluster binding;0.00971183807795139;12763!GO:0006040;amino sugar metabolic process;0.0149798725366914;12763!GO:0051536;iron-sulfur cluster binding;0.0223541333869878;12763!GO:0051540;metal cluster binding;0.0223541333869878;12763!GO:0015078;hydrogen ion transmembrane transporter activity;0.0427151651692191;12763!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0427151651692191;12763!GO:0004497;monooxygenase activity;0.0479560692337963;12763!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.0479560692337963;12763!GO:0022890;inorganic cation transmembrane transporter activity;0.0479560692337963;12763!GO:0046914;transition metal ion binding;0.0492165645382467;68718,12763!
}}
}}

Revision as of 12:49, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:24467811..24467828,-p1@ENSMUST00000147704
Mm9::chr13:24467831..24467841,-p3@ENSMUST00000147704
Mm9::chr13:24467891..24467902,-p2@ENSMUST00000147704
Mm9::chr13:24467903..24467914,+p10@Cmah
Mm9::chr5:36896690..36896700,-p@chr5:36896690..36896700
-
Mm9::chr6:39329973..39329994,+p@chr6:39329973..39329994
+
Mm9::chr7:17429487..17429492,+p@chr7:17429487..17429492
+
Mm9::chr8:124999903..124999926,-p2@Rnf166


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030338CMP-N-acetylneuraminate monooxygenase activity0.00416358505650466
GO:0016716oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen0.00416358505650466
GO:0046381CMP-N-acetylneuraminate metabolic process0.00416358505650466
GO:0006054N-acetylneuraminate metabolic process0.00780608038529814
GO:0009225nucleotide-sugar metabolic process0.00858527691340211
GO:0016681oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor0.00858527691340211
GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors0.00858527691340211
GO:0008121ubiquinol-cytochrome-c reductase activity0.00858527691340211
GO:00515372 iron, 2 sulfur cluster binding0.00971183807795139
GO:0006040amino sugar metabolic process0.0149798725366914
GO:0051536iron-sulfur cluster binding0.0223541333869878
GO:0051540metal cluster binding0.0223541333869878
GO:0015078hydrogen ion transmembrane transporter activity0.0427151651692191
GO:0015077monovalent inorganic cation transmembrane transporter activity0.0427151651692191
GO:0004497monooxygenase activity0.0479560692337963
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen0.0479560692337963
GO:0022890inorganic cation transmembrane transporter activity0.0479560692337963
GO:0046914transition metal ion binding0.0492165645382467



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:945&oldid=2150231"