Personal tools

MCL coexpression mm9:1345: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.093491854535337,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0476575850505087,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.149283935880684,-0.0588905767900073,-0.0420932618790392,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.047759586977928,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.242545950553041,0.187299926324616,0.227498536268219,0.199459686805721,0.619282438379263,0.835784053699074,0.80035939679561,0.503280415210775,0.707918863371501,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.0725319606683715,0.116635304289424,0.0944318910027472,0.256905012587473,0.272118890328463,0.239950103833468,0.104354898264311,0.0150801573169007,-0.031998412795923,-0.0588905767900073,-0.0588905767900073,0.373319723152589,0.514272967682241,0.967803090912889,1.08614153916111,0.995953687534752,0.321469427359203,0.281407382019279,0.406650410270278,0.299663424068573,0.48851118386599,0.109597558197364,0.21651659425903,0.149074125323078,0.315336974256428,0.319576527487129,0.488423452131741,0.0961928439409688,0.0980260021484007,0.213895577340954,0.295120483105775,0.322944899693997,0.435086419879128,-0.0486829127397607,-0.0588905767900073,-0.0404665623991028,-0.0588905767900073,-0.0213402649268433,-0.0588905767900073,-0.0588905767900073,-0.0125821350814346,0.0633022213689882,-0.0474996493534934,-0.0286036959279083,-0.0588905767900073,-0.0493529031575478,0.000868802624067327,-0.0588905767900073,-0.0588905767900073,-0.00848155040789995,-0.0425446128226103,-0.00832013866784437,0.00782614511527173,-0.0588905767900073,-0.0322295866832012,-0.00134798666231122,-0.0244676754895213,0.0318082641404615,-0.0296578149574135,0.0051968526087972,0.00210484711313023,-0.0588905767900073,0.191382402880404,0.0328499626790951,0.161269655104754,0.0982306378081265,0.0913042235956743,-0.0588905767900073,0.374704478710754,0.294948167432444,-0.0424235998551837,-0.0588905767900073,-0.0588905767900073,-0.0502320805368188,0.104420673607664,0.180610282920254,0.325694265651647,0.321259120795988,0.358845242715231,0.191301578954467,0.178115841597051,0.126495249851183,0.127396816005238,0.0772589672713812,0.142797071143099,-0.0261818416301206,0.0214388203468123,0.0249008176228555,0.11641430464755,0.160698880163456,0.176639411912097,0.174722871693363,0.178045570988393,-0.0329437597604933,-0.00314503254849367,0.0608064961995425,0.177536540918855,0.278186676109195,0.303461554300285,0.340471224823805,-0.0165006641919815,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0436405331204625,-0.0469064354252443,-0.012750541594178,-0.0458891433313487,-0.0313596852725582,-0.0286242805054204,0.0277416820237317,-0.0076568650403093,0.0115300791312657,0.0581167292517995,0.0675274657078163,0.0063240942789429,0.0306730389534885,0.0670170445192892,0.508779044457678,1.23071145842547,-0.0588905767900073,-0.0419069342245662,-0.0331747324675315,-0.0588905767900073,-0.0501167509503407,-0.0113441054300014,-0.0322581546058087,-0.0136045522562084,-0.0307816873738068,-0.0382814115422592,0.0371158403740774,0.0042573227566136,0.00914129365714688,-0.0588905767900073,0.00830780798092437,-0.0249872174455912,0.00195781991698412,0.00785315079997674,0.026515789362037,-0.010959937728311,0.0191556130698097,0.0172407364896756,-0.00939944921839607,-0.0302009066108721,-0.0309553191301802,-0.00918447346312623,-0.0400978014406582,-0.0588905767900073,-0.0459015574698342,-0.0442093765917433,-0.0455213889750047,-0.0588905767900073,-0.0588905767900073,-0.0259924582015458,-0.0385611285565112,-0.0588905767900073,0.0056056002283905,-0.00462350340354518,-0.0588905767900073,-0.0588905767900073,-0.0157787789179355,-0.0588905767900073,0.0119986025728018,-0.0463303583331109,-0.0166149346031824,-0.0290977530859932,0.00754640515849833,0.0279377909934597,0.029271551645089,-0.00960490708737517,0.0519587315781821,0.0895125161946557,0.0764722938179697,0.0383822508990528,0.0338816973174168,0.0381955103650235,-0.0588905767900073,-0.0588905767900073,0.049044883824618,0.179233014553096,0.174061531229024,0.125292134286358,0.292071372529802,0.161807550150118,0.0493415449458459,0.0364538022725517,0.0778030800766428,-0.0278704536928102,-0.0297722570781215,0.0277080711159415,0.00864367841313851,0.0945958730621808,0.097720388484027,0.145397256259218,0.130319025708985,0.181084777794746,0.187744254291536,0.238646741088135,0.0349220611591442,-0.0145097356319369,-0.039770760735536,-0.0588905767900073,-0.0065684081312615,0.0279045408824613,-0.0256144188093683,-0.0193390265623735,0.0151816110574091,0.0255778107922752,-0.0588905767900073,-0.00759292347511212,0.176344020590727,-0.0588905767900073,-0.0324746290126236,-0.044834036723917,0.0394642624054335,0.11940614815152,0.131409573618318,0.18114814552196,-0.0588905767900073,-0.0588905767900073,0.124296517799758,0.231092719395843,0.161146888507095,0.170540092698691,0.127512250955897,0.127092739724332,-0.0256455101513692,0.236576371105786,-0.0261942530021213,-0.0104278218807711,-0.0187666739999523,-0.0339068715372824,-0.0496166343571383,-0.0588905767900073,-0.0588905767900073,-0.0399284580512108,-0.033784971853404,0.038949164889569,-0.0588905767900073,0.0595200667272603,0.0194478754974044,0.066559171048597,0.0440276480693625,0.0235740017177615,0.0824380466001298,0.0287421765103568,-0.00333215260269137,0.097472251971802,-0.0588905767900073,-0.0387188345072262,-0.0367249734279591,0.0192783084403027,0.0454375781565144,0.0548995010011458,0.0996949397778407,0.0985959246959024,0.010576461436734,-0.0275651936021794,-0.0222485832664398,-0.0234362312835728,0.010814007787989,-0.0126019634430594,-0.0118790685948805,0.0264734417901205,0.0076606170822165,-0.0424593087444398,0.0176549238339046,0.0140869012671992,0.0099413826061075,0.00143488393878567,0.00390049466462367,0.015410204953497,-0.031127183181108,0.196515496796918,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.0623988537488553,0.0692001534493919,0.194099925720726,0.107849305541904,0.140937623204208,0.5010843420825,0.496607740505473,0.436521620931591,0.409456345912675,0.464626108699541,0.309152905232798,0.309885495231173,0.465706092084134,0.304260627106628,0.292796891368802,-0.0517430081970749,0.03832638049322,0.0880291180787075,0.315547380459687,0.259088034775915,0.235406418670983,0.226407351759376,0.281088439280037,0.25892602088,0.244965621883009,0.317576691461235,0.260945106782652,0.255936100571268,0.256865015695099,0.278807024097528,0.184764616550813,0.24551863509719,0.225579365819088,0.222048458824439,0.206929856874924,0.240010483448793,0.260641942912079,0.261176693242764,0.224276777736436,0.238102583492077,0.244289534165965,0.259445971322628,0.215337907958499,0.271013894504922,0.153275721262337,0.219423041575074,0.213529062123628,0.194775352684825,0.245270127211782,0.281213819693907,0.446309616276355,0.22342823556563,0.249917802757631,0.22722705849027,0.236381771184093,0.18656105847146
|coexpression_dpi_cluster_scores_mean=0.093491854535337,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0476575850505087,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.149283935880684,-0.0588905767900073,-0.0420932618790392,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.047759586977928,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.242545950553041,0.187299926324616,0.227498536268219,0.199459686805721,0.619282438379263,0.835784053699074,0.80035939679561,0.503280415210775,0.707918863371501,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.0725319606683715,0.116635304289424,0.0944318910027472,0.256905012587473,0.272118890328463,0.239950103833468,0.104354898264311,0.0150801573169007,-0.031998412795923,-0.0588905767900073,-0.0588905767900073,0.373319723152589,0.514272967682241,0.967803090912889,1.08614153916111,0.995953687534752,0.321469427359203,0.281407382019279,0.406650410270278,0.299663424068573,0.48851118386599,0.109597558197364,0.21651659425903,0.149074125323078,0.315336974256428,0.319576527487129,0.488423452131741,0.0961928439409688,0.0980260021484007,0.213895577340954,0.295120483105775,0.322944899693997,0.435086419879128,-0.0486829127397607,-0.0588905767900073,-0.0404665623991028,-0.0588905767900073,-0.0213402649268433,-0.0588905767900073,-0.0588905767900073,-0.0125821350814346,0.0633022213689882,-0.0474996493534934,-0.0286036959279083,-0.0588905767900073,-0.0493529031575478,0.000868802624067327,-0.0588905767900073,-0.0588905767900073,-0.00848155040789995,-0.0425446128226103,-0.00832013866784437,0.00782614511527173,-0.0588905767900073,-0.0322295866832012,-0.00134798666231122,-0.0244676754895213,0.0318082641404615,-0.0296578149574135,0.0051968526087972,0.00210484711313023,-0.0588905767900073,0.191382402880404,0.0328499626790951,0.161269655104754,0.0982306378081265,0.0913042235956743,-0.0588905767900073,0.374704478710754,0.294948167432444,-0.0424235998551837,-0.0588905767900073,-0.0588905767900073,-0.0502320805368188,0.104420673607664,0.180610282920254,0.325694265651647,0.321259120795988,0.358845242715231,0.191301578954467,0.178115841597051,0.126495249851183,0.127396816005238,0.0772589672713812,0.142797071143099,-0.0261818416301206,0.0214388203468123,0.0249008176228555,0.11641430464755,0.160698880163456,0.176639411912097,0.174722871693363,0.178045570988393,-0.0329437597604933,-0.00314503254849367,0.0608064961995425,0.177536540918855,0.278186676109195,0.303461554300285,0.340471224823805,-0.0165006641919815,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,-0.0436405331204625,-0.0469064354252443,-0.012750541594178,-0.0458891433313487,-0.0313596852725582,-0.0286242805054204,0.0277416820237317,-0.0076568650403093,0.0115300791312657,0.0581167292517995,0.0675274657078163,0.0063240942789429,0.0306730389534885,0.0670170445192892,0.508779044457678,1.23071145842547,-0.0588905767900073,-0.0419069342245662,-0.0331747324675315,-0.0588905767900073,-0.0501167509503407,-0.0113441054300014,-0.0322581546058087,-0.0136045522562084,-0.0307816873738068,-0.0382814115422592,0.0371158403740774,0.0042573227566136,0.00914129365714688,-0.0588905767900073,0.00830780798092437,-0.0249872174455912,0.00195781991698412,0.00785315079997674,0.026515789362037,-0.010959937728311,0.0191556130698097,0.0172407364896756,-0.00939944921839607,-0.0302009066108721,-0.0309553191301802,-0.00918447346312623,-0.0400978014406582,-0.0588905767900073,-0.0459015574698342,-0.0442093765917433,-0.0455213889750047,-0.0588905767900073,-0.0588905767900073,-0.0259924582015458,-0.0385611285565112,-0.0588905767900073,0.0056056002283905,-0.00462350340354518,-0.0588905767900073,-0.0588905767900073,-0.0157787789179355,-0.0588905767900073,0.0119986025728018,-0.0463303583331109,-0.0166149346031824,-0.0290977530859932,0.00754640515849833,0.0279377909934597,0.029271551645089,-0.00960490708737517,0.0519587315781821,0.0895125161946557,0.0764722938179697,0.0383822508990528,0.0338816973174168,0.0381955103650235,-0.0588905767900073,-0.0588905767900073,0.049044883824618,0.179233014553096,0.174061531229024,0.125292134286358,0.292071372529802,0.161807550150118,0.0493415449458459,0.0364538022725517,0.0778030800766428,-0.0278704536928102,-0.0297722570781215,0.0277080711159415,0.00864367841313851,0.0945958730621808,0.097720388484027,0.145397256259218,0.130319025708985,0.181084777794746,0.187744254291536,0.238646741088135,0.0349220611591442,-0.0145097356319369,-0.039770760735536,-0.0588905767900073,-0.0065684081312615,0.0279045408824613,-0.0256144188093683,-0.0193390265623735,0.0151816110574091,0.0255778107922752,-0.0588905767900073,-0.00759292347511212,0.176344020590727,-0.0588905767900073,-0.0324746290126236,-0.044834036723917,0.0394642624054335,0.11940614815152,0.131409573618318,0.18114814552196,-0.0588905767900073,-0.0588905767900073,0.124296517799758,0.231092719395843,0.161146888507095,0.170540092698691,0.127512250955897,0.127092739724332,-0.0256455101513692,0.236576371105786,-0.0261942530021213,-0.0104278218807711,-0.0187666739999523,-0.0339068715372824,-0.0496166343571383,-0.0588905767900073,-0.0588905767900073,-0.0399284580512108,-0.033784971853404,0.038949164889569,-0.0588905767900073,0.0595200667272603,0.0194478754974044,0.066559171048597,0.0440276480693625,0.0235740017177615,0.0824380466001298,0.0287421765103568,-0.00333215260269137,0.097472251971802,-0.0588905767900073,-0.0387188345072262,-0.0367249734279591,0.0192783084403027,0.0454375781565144,0.0548995010011458,0.0996949397778407,0.0985959246959024,0.010576461436734,-0.0275651936021794,-0.0222485832664398,-0.0234362312835728,0.010814007787989,-0.0126019634430594,-0.0118790685948805,0.0264734417901205,0.0076606170822165,-0.0424593087444398,0.0176549238339046,0.0140869012671992,0.0099413826061075,0.00143488393878567,0.00390049466462367,0.015410204953497,-0.031127183181108,0.196515496796918,-0.0588905767900073,-0.0588905767900073,-0.0588905767900073,0.0623988537488553,0.0692001534493919,0.194099925720726,0.107849305541904,0.140937623204208,0.5010843420825,0.496607740505473,0.436521620931591,0.409456345912675,0.464626108699541,0.309152905232798,0.309885495231173,0.465706092084134,0.304260627106628,0.292796891368802,-0.0517430081970749,0.03832638049322,0.0880291180787075,0.315547380459687,0.259088034775915,0.235406418670983,0.226407351759376,0.281088439280037,0.25892602088,0.244965621883009,0.317576691461235,0.260945106782652,0.255936100571268,0.256865015695099,0.278807024097528,0.184764616550813,0.24551863509719,0.225579365819088,0.222048458824439,0.206929856874924,0.240010483448793,0.260641942912079,0.261176693242764,0.224276777736436,0.238102583492077,0.244289534165965,0.259445971322628,0.215337907958499,0.271013894504922,0.153275721262337,0.219423041575074,0.213529062123628,0.194775352684825,0.245270127211782,0.281213819693907,0.446309616276355,0.22342823556563,0.249917802757631,0.22722705849027,0.236381771184093,0.18656105847146
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0834533319011762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137226456757551,0.0400883801197738,0.14139415693411,0.125501532238567,0.537218322738753,0.577171715542134,0.594796210411408,0.500380530074151,0.777307802252984,0,0,0,0,0.054710539498653,0,0.301330071196362,0.298598404391112,0.213207239280454,0,0,0,0,0,0.36748646550033,0.525588586677437,0.819460309250082,0.895296640181293,0.832584259193633,0.327047589267698,0.299038067958519,0.358949466352182,0.230974231187208,0.453079347071492,0,0.228264567791921,0.113327147040051,0.309223845791606,0.315064478094717,0.48906556937507,0.106932678779961,0,0.139842032979651,0.365704819566175,0.33309514625958,0.522273166319593,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0257048884249574,0,0.173302165276102,0,0.0325594900422539,0,0,0,0.320285113217106,0.0825867363219064,0,0,0,0,0.109369408053162,0.222888897389984,0.327804475339749,0.224054515245961,0.202428729880121,0.210415946511272,0.147138261851992,0.0789505891421295,0.048248869178847,0,0.0414719663749819,0,0,0,0.0876889746819101,0.1379170696629,0.133673638306551,0.165990606316977,0.090551004599824,0,0,0.0351946358075573,0.152774908772213,0.184989903032522,0.155320798667756,0.256848695137383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0058194652675728,0,0.465281941951366,1.03212171000083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0147194505648231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.043440458408578,0.0321269055488328,0,0,0.0293361777120366,0,0,0,0,0.170746144160095,0.0894974591558974,0.181945028984445,0.0488838268300191,0.0289310688955017,0,0.0423637962789889,0,0,0.054126280606808,0,0.055674254769948,0,0.060504220684743,0,0.152369899836226,0.119166637818118,0.061916064303354,0,0,0,0,0,0,0,0,0,0,0,0,0.151607852039883,0,0,0,0,0.0356406207688943,0.0661577744756082,0.057716207064756,0,0,0,0.0872710257363395,0.0932712007017061,0.0716602462358593,0.0244872863598586,0.0616451109273545,0,0.199340780935393,0,0,0,0,0,0,0,0,0,0,0,0.0401904713554668,0.0138017727028288,0.0412290086072516,0,0,0.017244733229267,0,0,0,0,0,0,0,0.0153039627367613,0,0.0654998639277315,0.0768342020728291,0,0,0,0,0,0,0,0,0,0,0,0,0.015947867244644,0,0,0,0,0,0,0,0,0,0,0.0365202021377223,0.0421752250554017,0,0.418381334213097,0.341588745213092,0.39189533213055,0.251968035153078,0.473844258844217,0.322092296516117,0.224020645200257,0.479727592586908,0.186403293356901,0.0906015960884875,0,0.145825435924841,0.0637900309992995,0.242601704758115,0.20825205368019,0.187689909581142,0.154513394593269,0.115608096853184,0.215330413983256,0.122520753817181,0.249834307687082,0.194758206527804,0.226892952090672,0.165282263485412,0.186440791180992,0.084586381933092,0.129578075275077,0.198307218446548,0.20546342740088,0.109241263598538,0.153599040921673,0.209175722594613,0.169342968499384,0.178102054159327,0.179270769845283,0.161377488512305,0.236038963822174,0.142510765959715,0.206741431078382,0.193442483447008,0.125475959038534,0.143181393241831,0.204343226098226,0.163338349270223,0.313598999911728,0.320319764014822,0.198796393206084,0.119893946266008,0.136492182323189,0.0432851562487011,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:55, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:43711137..43711157,+p4@Rnf182
Mm9::chr13:84196042..84196073,-p@chr13:84196042..84196073
-
Mm9::chr14:13178608..13178630,-p5@Fezf2
Mm9::chr8:87297280..87297326,-p2@Nfix
Mm9::chr8:87297330..87297365,-p5@Nfix
Mm9::chr8:87298020..87298041,-p9@Nfix


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1345&oldid=2150631"