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|coexpression_dpi_cluster_scores_median=0,0.130004032382152,0,0.114765798731257,0.176350522035494,0.223110820673195,0.286557635189855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207142253068256,0.296747688546062,0.13161059847983,0,0.317510962857369,0.139893826644815,0.210929545023223,0.139693508540141,0,0,0,0.556262034430048,0.367333024504598,0.452939575097851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198582584603541,0.269611904680974,0.402460470105275,0.537766572819957,0.607637995181504,0.488006492740875,0.226497835673566,0,0,0,0,0,0,0,0,0,0,0.256066717064573,0,0,0,0,0.0901223798974778,0.06097065795378,0,0.0514097768499148,0,0,0,0,0,0,0,0,0,0.247398600982213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0609639314262262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00867234426245889,0,0.258112387724949,0.313403641258937,0.181251987139822,0.198660934326757,0.250172801064011,0.344412150110516,0.276349694709285,0.260467204239197,0.281753333045843,0.174378754247607,0.302188197538295,0.203269403191864,0.250384951982191,0.278483662180697,0.366332397292521,0.203420156066496,0,0.0893741091821246,0,0.0617282168375118,0,0.0233922713236279,0,0,0.0397911079119007,0.0169914014530194,0.56443804640041,0.261220921603254,0.297277809725387,0.39968934066972,0.232452405555853,0.313118806878659,0.304656962657163,0.285102936565442,0.172137356316638,0.465669791425341,0.750547210186089,0.658841688617722,0.69881207430009,0.577879614645126,0.73818779075961,0.641186930020927,0,0.0528995663071599,0,0,0.0127546016753605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851172788165064,0.709886256819242,0.903118934048784,1.04199631943759,0.907176077702711,0.698679531262625,0.612904543946096,0.989107021341494,1.04294709338064,1.01691730848991,1.14683640530309,1.24307991066419,0.225536506026914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18621283455008,0,0,0.0814866010703366,0,0,0,0,0,0,0,0.204414294458671,0,0.38439576069386,0.216114080000972,0.00739852121657503,0.15737368738825,0.137179623837166,0.241516871244163,0.00773434761001746,0.146029630976082,0,0,0,0,0,0,0,0,0.0531569878936061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168142412849565,0.0929501780609664,0.128256143370844,0.274858772331615,0.10410103408673,0.135208615564222,0.174398930851754,0.215330413983256,0.245041507634362,0,0.139013627015232,0.0388749848471105,0.0763037466917402,0.0853958479931995,0.0825134734883093,0.0476191773904887,0.0766073954291401,0.04613331176867,0.158843797677303,0.128033729919821,0.0452644956973322,0.0826836781215088,0.110822898586572,0.10799917315244,0.123222093832873,0.0729583017401753,0.101427320830301,0.18842684556126,0,0.0924644954689594,0.0780974029773103,0,0.0384260001197566,0.119501648521835,0,0.117807431185137,0.137260345296186,0,0,0
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|gostat_on_MCL_coexpression=GO:0008206;bile acid metabolic process;0.0325830935551571;26424!GO:0042632;cholesterol homeostasis;0.0325830935551571;26424!GO:0055088;lipid homeostasis;0.0325830935551571;26424!GO:0055092;sterol homeostasis;0.0325830935551571;26424!
|gostat_on_MCL_coexpression=GO:0008206;bile acid metabolic process;0.0325830935551571;26424!GO:0042632;cholesterol homeostasis;0.0325830935551571;26424!GO:0055088;lipid homeostasis;0.0325830935551571;26424!GO:0055092;sterol homeostasis;0.0325830935551571;26424!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!1.09e-17!22;UBERON:0007499!1.09e-17!22;UBERON:0006925!1.09e-17!22;UBERON:0009497!1.09e-17!22;UBERON:0000015!1.09e-17!22;UBERON:0002423!1.09e-17!22;UBERON:0006235!1.09e-17!22;UBERON:0008835!1.09e-17!22;UBERON:0003894!1.09e-17!22;UBERON:0004161!1.09e-17!22;UBERON:0008836!1.09e-17!22;UBERON:0009854!1.62e-16!23;UBERON:0009856!1.62e-16!23;UBERON:0000160!8.23e-16!31;UBERON:0005409!1.30e-15!47;UBERON:0002365!1.82e-14!25;UBERON:0002330!1.82e-14!25;UBERON:0001007!2.36e-13!116;UBERON:0001555!2.36e-13!116;UBERON:0007026!2.36e-13!116;UBERON:0001264!8.10e-13!12;UBERON:0004119!9.00e-13!118;UBERON:0000925!9.00e-13!118;UBERON:0006595!9.00e-13!118;UBERON:0004921!2.20e-12!114;UBERON:0005177!2.06e-10!79;UBERON:0000949!4.25e-09!72;UBERON:0005172!6.07e-08!49;UBERON:0005173!6.07e-08!49;UBERON:0002417!6.07e-08!49;UBERON:0000916!6.07e-08!49;UBERON:0000344!6.13e-08!15;UBERON:0000466!1.21e-07!79;UBERON:0002100!1.99e-07!90;UBERON:0003929!3.79e-07!55;UBERON:0002075!3.82e-07!19;UBERON:0001242!8.27e-07!13;UBERON:0000060!8.27e-07!13;UBERON:0001262!8.27e-07!13;UBERON:0004786!8.27e-07!13
}}
}}

Revision as of 16:24, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:22857564..22857578,-p2@Tbccd1
Mm9::chr1:138857048..138857071,-p2@Nr5a2
Mm9::chr1:138857076..138857105,-p1@Nr5a2
Mm9::chr1:138857112..138857130,-p7@Nr5a2
Mm9::chr1:89470591..89470607,+p1@Neu2
Mm9::chr4:119032487..119032502,-p6@Ccdc30
Mm9::chr4:119032505..119032522,-p5@Ccdc30


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008206bile acid metabolic process0.0325830935551571
GO:0042632cholesterol homeostasis0.0325830935551571
GO:0055088lipid homeostasis0.0325830935551571
GO:0055092sterol homeostasis0.0325830935551571



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
liver1.09e-1722
epithelial sac1.09e-1722
digestive gland1.09e-1722
epithelium of foregut-midgut junction1.09e-1722
anatomical boundary1.09e-1722
hepatobiliary system1.09e-1722
foregut-midgut junction1.09e-1722
hepatic diverticulum1.09e-1722
liver primordium1.09e-1722
septum transversum1.09e-1722
liver bud1.09e-1722
digestive tract diverticulum1.62e-1623
sac1.62e-1623
intestine8.23e-1631
gastrointestinal system1.30e-1547
exocrine gland1.82e-1425
exocrine system1.82e-1425
digestive system2.36e-13116
digestive tract2.36e-13116
primitive gut2.36e-13116
pancreas8.10e-1312
endoderm-derived structure9.00e-13118
endoderm9.00e-13118
presumptive endoderm9.00e-13118
subdivision of digestive tract2.20e-12114
trunk region element2.06e-1079
endocrine system4.25e-0972
abdomen element6.07e-0849
abdominal segment element6.07e-0849
abdominal segment of trunk6.07e-0849
abdomen6.07e-0849
mucosa6.13e-0815
immaterial anatomical entity1.21e-0779
trunk1.99e-0790
gut epithelium3.79e-0755
viscus3.82e-0719
intestinal mucosa8.27e-0713
anatomical wall8.27e-0713
wall of intestine8.27e-0713
gastrointestinal system mucosa8.27e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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