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MCL coexpression mm9:2041: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000970!6.22e-16!9;UBERON:0000019!6.22e-16!9;UBERON:0000047!6.22e-16!9;UBERON:0010312!6.22e-16!9;UBERON:0004088!6.22e-16!9;UBERON:0002104!6.22e-16!9;UBERON:0001456!6.22e-16!9;UBERON:0003072!6.22e-16!9;UBERON:0004128!6.22e-16!9;UBERON:0003071!6.22e-16!9;UBERON:0000007!2.10e-15!8;UBERON:0003296!2.10e-15!8;UBERON:0010133!2.10e-15!8;UBERON:0003056!1.79e-14!49;UBERON:0001444!1.25e-12!11;UBERON:0001894!6.22e-12!10;UBERON:0006222!6.22e-12!10;UBERON:0000020!2.15e-11!12;UBERON:0001032!2.15e-11!12;UBERON:0004456!2.15e-11!12;UBERON:0000033!2.38e-10!13;UBERON:0005085!2.38e-10!13;UBERON:0002346!1.48e-09!64;UBERON:0003075!1.48e-09!64;UBERON:0007284!1.48e-09!64;UBERON:0010371!1.28e-07!73
}}
}}

Revision as of 17:50, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:74039853..74039857,-p@chr12:74039853..74039857
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Mm9::chr12:74040575..74040593,-p@chr12:74040575..74040593
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Mm9::chr12:74040861..74040875,+p1@Six6
Mm9::chr12:74040895..74040916,+p2@Six6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
eye6.22e-169
camera-type eye6.22e-169
simple eye6.22e-169
immature eye6.22e-169
ocular region6.22e-169
visual system6.22e-169
face6.22e-169
optic cup6.22e-169
optic vesicle6.22e-169
eye primordium6.22e-169
pituitary gland2.10e-158
gland of diencephalon2.10e-158
neuroendocrine gland2.10e-158
pre-chordal neural plate1.79e-1449
subdivision of head1.25e-1211
diencephalon6.22e-1210
future diencephalon6.22e-1210
sense organ2.15e-1112
sensory system2.15e-1112
entire sense organ system2.15e-1112
head2.38e-1013
ectodermal placode2.38e-1013
neurectoderm1.48e-0964
neural plate1.48e-0964
presumptive neural plate1.48e-0964
ecto-epithelium1.28e-0773


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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