Personal tools

MCL coexpression mm9:2581: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=-0.163496165673334,0.528335378269369,0.581917169445128,0.331651809973651,0.319928324766777,0.270534478585537,0.419866683702864,-0.535337959008734,-0.054240658933137,0.00263540377578991,-0.30282886319673,-0.269601543274368,-0.590502225325559,-0.641132771883541,-0.376645921531049,-0.368001678001943,-0.333888895378155,-0.465096437217166,-0.450782897314212,-0.333888895378155,0.00667538979007487,-0.448351153864978,-0.570999396848472,0.565746076766635,0.582677039531461,0.583588401143464,0.485648851427724,0.534848608659158,0.195254931539032,0.107682281104354,0.442885007009356,-0.120362990865457,-0.00632141170821021,-0.67753024895356,-0.333888895378155,-0.286627782290321,-0.126386998910571,0.208763368502061,0.0748039062340317,0.156644745230871,0.195822116727753,-0.107793042266543,0.0524111340355465,0.694193741445731,0.656511471733039,0.57499029088706,0.190789398284014,0.127409456450861,0.227183016543695,0.265825545732877,0.210050384467439,0.102360078457962,-0.110878549426475,-0.0970086308845629,-0.244530206737376,0.757684227595743,0.499721588250399,0.525352695576379,-0.471528051849789,-0.364088685786184,-0.461399560560363,0.600279684467808,0.529781213259515,1.24566595313897,1.29538242811114,1.31518129922568,0.939952530047033,0.72396943123871,-0.559904754279471,-0.590185497330352,-0.576707427084576,-0.274554505227907,-0.16643786162024,-0.505182630170088,-0.571393234955241,-0.455742247271209,-0.333888895378155,-0.0967054304123492,-0.247830948712,-0.439029869554216,-0.4739262955112,-0.436470112674741,-0.0986813918207748,-0.219175084474749,-0.180714657039925,-0.284281033209446,-0.377238798129963,-0.351522962864657,0.339087303848835,0.486908291794838,0.391582086908559,0.219182819130948,1.00908808839784,0.165634989196366,0.0125469160182192,0.112043247359665,0.0383089848491576,0.590914868999696,0.416961290787955,0.576783327438649,-0.225595832143599,0.0246673811062933,-0.333888895378155,-0.333888895378155,0.580215318227652,0.606717937133614,0.64923514209233,0.124636284175726,0.395535872170897,0.603729096488699,0.0186759941263694,0.417291813307831,0.083467936374971,0.179440542204871,0.259147628022289,0.227092971395939,0.590833394141261,0.14674904118975,-0.230088023281089,0.176602058409936,-0.0656178401376006,0.124122288154159,0.524176531561946,-0.11702258724269,-0.244186240170073,0.216898243266989,0.320123673002142,0.203222197270164,0.481086588939074,-0.109771084009116,-0.0091438828203535,-0.538607960580095,-0.141788076703153,-0.0866163719521819,-0.0415834299834488,-0.116677443958427,0.102475609593785,0.150014816261478,0.405965253372579,-0.0913658414845568,-0.280764164349044,-0.328467036466695,-0.30401958268062,-0.171888047218186,-0.0432954087490003,-0.334007521158557,-0.390396761618859,-0.0925506594881371,-0.333888895378155,-0.270059215698474,-0.0743537632962032,-0.173473172651888,-0.141852928103833,0.183916875917538,0.28773193178139,-0.147115795947809,0.457278943286169,0.322781321506182,0.199596837590982,-0.161870493960716,-0.340544416959205,-0.311500834111617,-0.165541858435458,-0.255880294626204,-0.299422456197935,-0.187177639566861,-0.144208141660631,-0.242738938110931,-0.0796073047677831,-0.0016176713252633,0.0272911865612124,0.030812132992785,0.139736886244808,0.010082197140928,-0.284476575259647,-0.441917908835066,0.600590972139613,0.362184148311947,-0.179593829443301,-0.243194765949461,-0.0905266101374949,-0.0515045362449975,0.0737817553778634,0.0337613109960362,0.194081774598885,0.264308420200709,0.10691733823451,0.244748203972055,0.247195268223682,-0.0487822980098218,0.165987874602913,0.327407147390276,0.0658503099697212,-0.0656966862797332,-0.199960712382,-0.1047698074718,-0.0251731944760126,0.0206890884869359,0.155620401686753,-0.058425302292556,0.0194482407391173,0.0606968999267645,0.0609589221594211,-0.157642673783153,-0.206861120735975,-0.0596842169826798,-0.0707532971404023,-0.0353907964534368,0.088725746683836,0.0787631154819282,0.257937055476213,0.118717586631197,0.0478133430718882,0.22301476343319,0.12432971968087,0.322794135647317,0.139360286105894,0.307298034642772,0.0602168795097293,-0.258527584636776,-0.268322259555124,-0.206949364038703,-0.166754624321409,-0.0317663861117072,0.0514066205688969,0.226904581233003,0.0496960354507203,0.166296963554598,0.00613935249897135,0.0297488410633645,0.210914027276384,0.0234084181423553,1.21402702641761,1.25344617800976,0.161392557092901,0.0426303462241276,-0.00676421006319405,-0.0444233255102018,0.635165164031542,-0.0890151146900259,-0.0271653664420221,-0.153441621944806,-0.123031304072929,0.227970882818094,0.154516374843695,0.146043779257529,0.119220202946468,0.149811204434561,0.0816428478907897,0.132671482453643,0.161530724597243,-0.0537455692902281,-0.0653519795854043,0.247970350101816,0.032991722678325,-0.039175270186571,-0.0535448817064207,-0.0944362403180463,0.00480810118522135,-0.217468739398006,0.215258099174558,0.107049404097792,-0.134023222532093,-0.0583985455781392,0.0929675909513723,-0.0261029754887842,0.309997469841935,-0.333888895378155,-0.073028490789641,-0.118248396541338,0.0127974413685036,-0.169307604366076,-0.00107828455699222,0.16182949191338,0.557804940790468,0.431798379118561,0.071576787401691,0.52221842383408,0.357872671357183,0.256939343015693,0.201306176572169,0.330724495204567,0.393791634235766,0.139556211269183,0,-0.0173579031810862,-0.100277731943805,-0.246920541360688,-0.233950465672986,-0.00268622139387331,0.227439735926937,0.263253336431277,0.272535405111936,0.345586598250026,-0.165242943180697,0.0765387443573194,0.0116180309277288,0.184621261667662,0.174592877940373,0.188084404482258,0.394471886669292,0.263563024870488,0.135082041588065,-0.160581581574269,0.178631643107031,-0.335871735984121,-0.204979032831941,-0.154640959983029,-0.19574611518132,-0.24784880914198,-0.202889167522692,-0.116136055001831,0.305149025141508,0.257065392397595,0.145572686411487,-0.121162822339548,-0.186073362478499,-0.217237036385249,-0.190948316164825,0.0189083163643475,-0.0998616690029129,-0.0687482692477248,-0.132284749700315,-0.186563301256138,-0.148219942048479,-0.254110047934063,-0.256551605670681,-0.223758795634248,-0.167308533724759,0.33147500087714,0.478387208047646,0.463263086988529,0.422289790362815,0.370002467299134,0.657828791843706,0.338007424969912,0.611069504451919,0.0648696487717029,-0.164444906300603,-0.10211706607991,-0.537693036243897,-0.271556103049704,-0.471734644951268,-0.333888895378155,-0.109868250177898,-0.398629834094808,-0.171580717827987,-0.333888895378155,-0.251974891609982,-0.335685441649752,-0.265430810478909,0.116137826033252,-0.0225449871054854,-0.0110370151800345,0.0220034394986384,0.0157341957984691,0.0189787645594561,0.0344421816282057,-0.0298472844301643,-0.0127674439779331,0.0259107864485781,-0.0284527099984516,-0.0540511034819688,-0.0916192972861758,-0.111818062127592,-0.183097151984607,-0.0443965102260225,-0.0815957208839623,0.0011303019499822,-0.0736188270948825,-0.0908040958273334,-0.176722585151036,-0.0458423720239039,-0.0676228331641733,-0.071426646265971,-0.0812277887012359,-0.014484470841413,0.104245256749864,-0.0440591979676853,-0.095112793797177,-0.141649600006848,-0.08161536821299,0.14163790660943,0.104050922547624,0.127319494820723,0.352812472672624,0.344262170113626,0.200962551858494,0.121708498515798
|coexpression_dpi_cluster_scores_median=-0.163496165673334,0.528335378269369,0.581917169445128,0.331651809973651,0.319928324766777,0.270534478585537,0.419866683702864,-0.535337959008734,-0.054240658933137,0.00263540377578991,-0.30282886319673,-0.269601543274368,-0.590502225325559,-0.641132771883541,-0.376645921531049,-0.368001678001943,-0.333888895378155,-0.465096437217166,-0.450782897314212,-0.333888895378155,0.00667538979007487,-0.448351153864978,-0.570999396848472,0.565746076766635,0.582677039531461,0.583588401143464,0.485648851427724,0.534848608659158,0.195254931539032,0.107682281104354,0.442885007009356,-0.120362990865457,-0.00632141170821021,-0.67753024895356,-0.333888895378155,-0.286627782290321,-0.126386998910571,0.208763368502061,0.0748039062340317,0.156644745230871,0.195822116727753,-0.107793042266543,0.0524111340355465,0.694193741445731,0.656511471733039,0.57499029088706,0.190789398284014,0.127409456450861,0.227183016543695,0.265825545732877,0.210050384467439,0.102360078457962,-0.110878549426475,-0.0970086308845629,-0.244530206737376,0.757684227595743,0.499721588250399,0.525352695576379,-0.471528051849789,-0.364088685786184,-0.461399560560363,0.600279684467808,0.529781213259515,1.24566595313897,1.29538242811114,1.31518129922568,0.939952530047033,0.72396943123871,-0.559904754279471,-0.590185497330352,-0.576707427084576,-0.274554505227907,-0.16643786162024,-0.505182630170088,-0.571393234955241,-0.455742247271209,-0.333888895378155,-0.0967054304123492,-0.247830948712,-0.439029869554216,-0.4739262955112,-0.436470112674741,-0.0986813918207748,-0.219175084474749,-0.180714657039925,-0.284281033209446,-0.377238798129963,-0.351522962864657,0.339087303848835,0.486908291794838,0.391582086908559,0.219182819130948,1.00908808839784,0.165634989196366,0.0125469160182192,0.112043247359665,0.0383089848491576,0.590914868999696,0.416961290787955,0.576783327438649,-0.225595832143599,0.0246673811062933,-0.333888895378155,-0.333888895378155,0.580215318227652,0.606717937133614,0.64923514209233,0.124636284175726,0.395535872170897,0.603729096488699,0.0186759941263694,0.417291813307831,0.083467936374971,0.179440542204871,0.259147628022289,0.227092971395939,0.590833394141261,0.14674904118975,-0.230088023281089,0.176602058409936,-0.0656178401376006,0.124122288154159,0.524176531561946,-0.11702258724269,-0.244186240170073,0.216898243266989,0.320123673002142,0.203222197270164,0.481086588939074,-0.109771084009116,-0.0091438828203535,-0.538607960580095,-0.141788076703153,-0.0866163719521819,-0.0415834299834488,-0.116677443958427,0.102475609593785,0.150014816261478,0.405965253372579,-0.0913658414845568,-0.280764164349044,-0.328467036466695,-0.30401958268062,-0.171888047218186,-0.0432954087490003,-0.334007521158557,-0.390396761618859,-0.0925506594881371,-0.333888895378155,-0.270059215698474,-0.0743537632962032,-0.173473172651888,-0.141852928103833,0.183916875917538,0.28773193178139,-0.147115795947809,0.457278943286169,0.322781321506182,0.199596837590982,-0.161870493960716,-0.340544416959205,-0.311500834111617,-0.165541858435458,-0.255880294626204,-0.299422456197935,-0.187177639566861,-0.144208141660631,-0.242738938110931,-0.0796073047677831,-0.0016176713252633,0.0272911865612124,0.030812132992785,0.139736886244808,0.010082197140928,-0.284476575259647,-0.441917908835066,0.600590972139613,0.362184148311947,-0.179593829443301,-0.243194765949461,-0.0905266101374949,-0.0515045362449975,0.0737817553778634,0.0337613109960362,0.194081774598885,0.264308420200709,0.10691733823451,0.244748203972055,0.247195268223682,-0.0487822980098218,0.165987874602913,0.327407147390276,0.0658503099697212,-0.0656966862797332,-0.199960712382,-0.1047698074718,-0.0251731944760126,0.0206890884869359,0.155620401686753,-0.058425302292556,0.0194482407391173,0.0606968999267645,0.0609589221594211,-0.157642673783153,-0.206861120735975,-0.0596842169826798,-0.0707532971404023,-0.0353907964534368,0.088725746683836,0.0787631154819282,0.257937055476213,0.118717586631197,0.0478133430718882,0.22301476343319,0.12432971968087,0.322794135647317,0.139360286105894,0.307298034642772,0.0602168795097293,-0.258527584636776,-0.268322259555124,-0.206949364038703,-0.166754624321409,-0.0317663861117072,0.0514066205688969,0.226904581233003,0.0496960354507203,0.166296963554598,0.00613935249897135,0.0297488410633645,0.210914027276384,0.0234084181423553,1.21402702641761,1.25344617800976,0.161392557092901,0.0426303462241276,-0.00676421006319405,-0.0444233255102018,0.635165164031542,-0.0890151146900259,-0.0271653664420221,-0.153441621944806,-0.123031304072929,0.227970882818094,0.154516374843695,0.146043779257529,0.119220202946468,0.149811204434561,0.0816428478907897,0.132671482453643,0.161530724597243,-0.0537455692902281,-0.0653519795854043,0.247970350101816,0.032991722678325,-0.039175270186571,-0.0535448817064207,-0.0944362403180463,0.00480810118522135,-0.217468739398006,0.215258099174558,0.107049404097792,-0.134023222532093,-0.0583985455781392,0.0929675909513723,-0.0261029754887842,0.309997469841935,-0.333888895378155,-0.073028490789641,-0.118248396541338,0.0127974413685036,-0.169307604366076,-0.00107828455699222,0.16182949191338,0.557804940790468,0.431798379118561,0.071576787401691,0.52221842383408,0.357872671357183,0.256939343015693,0.201306176572169,0.330724495204567,0.393791634235766,0.139556211269183,0,-0.0173579031810862,-0.100277731943805,-0.246920541360688,-0.233950465672986,-0.00268622139387331,0.227439735926937,0.263253336431277,0.272535405111936,0.345586598250026,-0.165242943180697,0.0765387443573194,0.0116180309277288,0.184621261667662,0.174592877940373,0.188084404482258,0.394471886669292,0.263563024870488,0.135082041588065,-0.160581581574269,0.178631643107031,-0.335871735984121,-0.204979032831941,-0.154640959983029,-0.19574611518132,-0.24784880914198,-0.202889167522692,-0.116136055001831,0.305149025141508,0.257065392397595,0.145572686411487,-0.121162822339548,-0.186073362478499,-0.217237036385249,-0.190948316164825,0.0189083163643475,-0.0998616690029129,-0.0687482692477248,-0.132284749700315,-0.186563301256138,-0.148219942048479,-0.254110047934063,-0.256551605670681,-0.223758795634248,-0.167308533724759,0.33147500087714,0.478387208047646,0.463263086988529,0.422289790362815,0.370002467299134,0.657828791843706,0.338007424969912,0.611069504451919,0.0648696487717029,-0.164444906300603,-0.10211706607991,-0.537693036243897,-0.271556103049704,-0.471734644951268,-0.333888895378155,-0.109868250177898,-0.398629834094808,-0.171580717827987,-0.333888895378155,-0.251974891609982,-0.335685441649752,-0.265430810478909,0.116137826033252,-0.0225449871054854,-0.0110370151800345,0.0220034394986384,0.0157341957984691,0.0189787645594561,0.0344421816282057,-0.0298472844301643,-0.0127674439779331,0.0259107864485781,-0.0284527099984516,-0.0540511034819688,-0.0916192972861758,-0.111818062127592,-0.183097151984607,-0.0443965102260225,-0.0815957208839623,0.0011303019499822,-0.0736188270948825,-0.0908040958273334,-0.176722585151036,-0.0458423720239039,-0.0676228331641733,-0.071426646265971,-0.0812277887012359,-0.014484470841413,0.104245256749864,-0.0440591979676853,-0.095112793797177,-0.141649600006848,-0.08161536821299,0.14163790660943,0.104050922547624,0.127319494820723,0.352812472672624,0.344262170113626,0.200962551858494,0.121708498515798
|gostat_on_MCL_coexpression=GO:0002020;protease binding;0.0179691565596517;13014!GO:0045670;regulation of osteoclast differentiation;0.0449007394651735;!GO:0002761;regulation of myeloid leukocyte differentiation;0.0449007394651735;!GO:0030316;osteoclast differentiation;0.0449007394651735;!GO:0004869;cysteine protease inhibitor activity;0.047117348123189;13014!GO:0045637;regulation of myeloid cell differentiation;0.047117348123189;!GO:0002573;myeloid leukocyte differentiation;0.047117348123189;!GO:0008344;adult locomotory behavior;0.047117348123189;13014!
|gostat_on_MCL_coexpression=GO:0002020;protease binding;0.0179691565596517;13014!GO:0045670;regulation of osteoclast differentiation;0.0449007394651735;!GO:0002761;regulation of myeloid leukocyte differentiation;0.0449007394651735;!GO:0030316;osteoclast differentiation;0.0449007394651735;!GO:0004869;cysteine protease inhibitor activity;0.047117348123189;13014!GO:0045637;regulation of myeloid cell differentiation;0.047117348123189;!GO:0002573;myeloid leukocyte differentiation;0.047117348123189;!GO:0008344;adult locomotory behavior;0.047117348123189;13014!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005256!1.31e-07!45
}}
}}

Revision as of 18:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:77888476..77888492,+p1@Cstb
Mm9::chrX:7339915..7339935,+p4@Tfe3
Mm9::chrX:7339938..7339963,+p1@Tfe3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0002020protease binding0.0179691565596517
GO:0045670regulation of osteoclast differentiation0.0449007394651735
GO:0002761regulation of myeloid leukocyte differentiation0.0449007394651735
GO:0030316osteoclast differentiation0.0449007394651735
GO:0004869cysteine protease inhibitor activity0.047117348123189
GO:0045637regulation of myeloid cell differentiation0.047117348123189
GO:0002573myeloid leukocyte differentiation0.047117348123189
GO:0008344adult locomotory behavior0.047117348123189



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
trunk mesenchyme1.31e-0745


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2581&oldid=2154823"