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|coexpression_dpi_cluster_scores_median=0,0.860219994798903,0.705404899478443,0.777336204280108,0.781241668813983,0.262858916462735,0.286557635189855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610165005328515,0,0,0.647296528367171,0.464278409906691,0.788260298919956,0.558192446902658,0.615205487476903,0.871513694478279,0.690625596872497,0.481221955569467,0,0,0,0.110202921672641,0.130776518055435,0.0806875710728457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0343850007733002,0.724449502277229,0.935449950277012,1.0508208825288,1.00418675793538,1.05884264766979,0.739337857698912,0,0,0,0,0,0,0,0,0,0,0.861009693302524,0,0.0601091194109999,0,0,0.0742834825563435,0.03048532897689,0.0700056732683379,0.175338540921997,0.346796567292608,0.154268114021477,0,0,0,0,0.819000914748279,0,0,0.695301208072695,0,0,0,0,0,0,0,0,0,0,0,0.0400218080716616,0,0.361703411804764,0,0,0,0,0,0,0,0.0244453339401045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12677036587779,0.805304488316847,0,0,0.023069750159465,0.113480691050742,0.190882538044845,0.342401927475659,0.793777793947479,0.53820940855366,0.440806233612666,0.41357664774707,0.418093140125307,0.713118349694972,0.871031276141173,0.679385859021823,0,0.101826401001437,0.327783284444535,0.531934299163241,0.601340279569795,0.688184235501803,0.806007198507142,1.14877162996587,1.25463494258972,1.17963247810304,1.09926736949321,0.0335066044590678,0.0325313900358032,0.0880872011895838,0.117692029840226,0.149375460818904,0.246468434036162,0.135713268090731,0.273478149430873,0.656690519387276,0.600512009514273,0.742092232991752,0.715288802654291,0.981901740540467,0.930824019644051,1.0634686931538,0,0,0,0,0,0,0,0,0,0,0,0.00167515119569239,0.0057188430256642,0,0,0,0.0090726337897523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0576433181427177,0,0,0,0,0.00688887558068406,0,0.0750375819757342,0.112371000179637,0,0.27726609757693,0.0416492222609206,0.1324189587654,0,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0.183528544603783,0,0,0,0,0,0,0.65208335830403,0,0,0,0,0,0,0,0,0,0,0.298960218513461,0,0,0.0139473174857886,0.008047936102323,0.109189488113754,0.223838914215041,0.291115867829719,0.327320263568258,1.11824047744647,0,0,0,0,0,0,0,0,0.0531569878936061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116233638616212,0.0132900133186298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0902324875353887,0.081359932135904,0.0883337030020067,0.0978461107777356,0.117558777278819,0.105289864841503,0.125998386215205,0.129225402702884,0.10632649485987,0.0694564521732113,0.0876140107689942,0.141706336142815,0.141371921720336,0.112067779638927,0.128033729919821,0.101437889214316,0.092873634605593,0.110822898586572,0.132969693993874,0.110099989955404,0.114517855140219,0.0669104154210854,0.140833093213404,0,0.132229279644795,0.075745179122343,0.113898280028657,0.117229416500102,0.0831455943943336,0,0.12898833846516,0.185660734839627,0,0.0865703124974023,0.0496236089010582
|coexpression_dpi_cluster_scores_median=0,0.860219994798903,0.705404899478443,0.777336204280108,0.781241668813983,0.262858916462735,0.286557635189855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610165005328515,0,0,0.647296528367171,0.464278409906691,0.788260298919956,0.558192446902658,0.615205487476903,0.871513694478279,0.690625596872497,0.481221955569467,0,0,0,0.110202921672641,0.130776518055435,0.0806875710728457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0343850007733002,0.724449502277229,0.935449950277012,1.0508208825288,1.00418675793538,1.05884264766979,0.739337857698912,0,0,0,0,0,0,0,0,0,0,0.861009693302524,0,0.0601091194109999,0,0,0.0742834825563435,0.03048532897689,0.0700056732683379,0.175338540921997,0.346796567292608,0.154268114021477,0,0,0,0,0.819000914748279,0,0,0.695301208072695,0,0,0,0,0,0,0,0,0,0,0,0.0400218080716616,0,0.361703411804764,0,0,0,0,0,0,0,0.0244453339401045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12677036587779,0.805304488316847,0,0,0.023069750159465,0.113480691050742,0.190882538044845,0.342401927475659,0.793777793947479,0.53820940855366,0.440806233612666,0.41357664774707,0.418093140125307,0.713118349694972,0.871031276141173,0.679385859021823,0,0.101826401001437,0.327783284444535,0.531934299163241,0.601340279569795,0.688184235501803,0.806007198507142,1.14877162996587,1.25463494258972,1.17963247810304,1.09926736949321,0.0335066044590678,0.0325313900358032,0.0880872011895838,0.117692029840226,0.149375460818904,0.246468434036162,0.135713268090731,0.273478149430873,0.656690519387276,0.600512009514273,0.742092232991752,0.715288802654291,0.981901740540467,0.930824019644051,1.0634686931538,0,0,0,0,0,0,0,0,0,0,0,0.00167515119569239,0.0057188430256642,0,0,0,0.0090726337897523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0576433181427177,0,0,0,0,0.00688887558068406,0,0.0750375819757342,0.112371000179637,0,0.27726609757693,0.0416492222609206,0.1324189587654,0,0,0,0,0,0,0,0,0,0,0,0.0915514965999916,0.183528544603783,0,0,0,0,0,0,0.65208335830403,0,0,0,0,0,0,0,0,0,0,0.298960218513461,0,0,0.0139473174857886,0.008047936102323,0.109189488113754,0.223838914215041,0.291115867829719,0.327320263568258,1.11824047744647,0,0,0,0,0,0,0,0,0.0531569878936061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116233638616212,0.0132900133186298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0902324875353887,0.081359932135904,0.0883337030020067,0.0978461107777356,0.117558777278819,0.105289864841503,0.125998386215205,0.129225402702884,0.10632649485987,0.0694564521732113,0.0876140107689942,0.141706336142815,0.141371921720336,0.112067779638927,0.128033729919821,0.101437889214316,0.092873634605593,0.110822898586572,0.132969693993874,0.110099989955404,0.114517855140219,0.0669104154210854,0.140833093213404,0,0.132229279644795,0.075745179122343,0.113898280028657,0.117229416500102,0.0831455943943336,0,0.12898833846516,0.185660734839627,0,0.0865703124974023,0.0496236089010582
|gostat_on_MCL_coexpression=GO:0019807;aspartoacylase activity;0.0347567648091107;71670!GO:0004315;3-oxoacyl-[acyl-carrier-protein] synthase activity;0.0347567648091107;71147!GO:0004046;aminoacylase activity;0.0347567648091107;71670!GO:0004312;fatty-acid synthase activity;0.0347567648091107;71147!GO:0015101;organic cation transmembrane transporter activity;0.0347567648091107;20517!GO:0042895;antibiotic transporter activity;0.0347567648091107;18400!GO:0008493;tetracycline transporter activity;0.0347567648091107;18400!GO:0015904;tetracycline transport;0.0347567648091107;18400!GO:0015307;drug:hydrogen antiporter activity;0.0347567648091107;18400!GO:0015520;tetracycline:hydrogen antiporter activity;0.0347567648091107;18400!GO:0008514;organic anion transmembrane transporter activity;0.0347567648091107;18400!GO:0046677;response to antibiotic;0.0347567648091107;18400!GO:0017110;nucleoside-diphosphatase activity;0.0458029772383249;12499!
|gostat_on_MCL_coexpression=GO:0019807;aspartoacylase activity;0.0347567648091107;71670!GO:0004315;3-oxoacyl-[acyl-carrier-protein] synthase activity;0.0347567648091107;71147!GO:0004046;aminoacylase activity;0.0347567648091107;71670!GO:0004312;fatty-acid synthase activity;0.0347567648091107;71147!GO:0015101;organic cation transmembrane transporter activity;0.0347567648091107;20517!GO:0042895;antibiotic transporter activity;0.0347567648091107;18400!GO:0008493;tetracycline transporter activity;0.0347567648091107;18400!GO:0015904;tetracycline transport;0.0347567648091107;18400!GO:0015307;drug:hydrogen antiporter activity;0.0347567648091107;18400!GO:0015520;tetracycline:hydrogen antiporter activity;0.0347567648091107;18400!GO:0008514;organic anion transmembrane transporter activity;0.0347567648091107;18400!GO:0046677;response to antibiotic;0.0347567648091107;18400!GO:0017110;nucleoside-diphosphatase activity;0.0458029772383249;12499!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!4.67e-17!31;UBERON:0009854!4.86e-15!23;UBERON:0009856!4.86e-15!23;UBERON:0005409!1.11e-14!47;UBERON:0002107!3.25e-14!22;UBERON:0007499!3.25e-14!22;UBERON:0006925!3.25e-14!22;UBERON:0009497!3.25e-14!22;UBERON:0000015!3.25e-14!22;UBERON:0002423!3.25e-14!22;UBERON:0006235!3.25e-14!22;UBERON:0008835!3.25e-14!22;UBERON:0003894!3.25e-14!22;UBERON:0004161!3.25e-14!22;UBERON:0008836!3.25e-14!22;UBERON:0005172!5.06e-13!49;UBERON:0005173!5.06e-13!49;UBERON:0002417!5.06e-13!49;UBERON:0000916!5.06e-13!49;UBERON:0002365!2.32e-12!25;UBERON:0002330!2.32e-12!25;UBERON:0004119!4.15e-12!118;UBERON:0000925!4.15e-12!118;UBERON:0006595!4.15e-12!118;UBERON:0001007!1.99e-11!116;UBERON:0001555!1.99e-11!116;UBERON:0007026!1.99e-11!116;UBERON:0004921!1.71e-10!114;UBERON:0000344!1.91e-10!15;UBERON:0001242!3.39e-09!13;UBERON:0000060!3.39e-09!13;UBERON:0001262!3.39e-09!13;UBERON:0004786!3.39e-09!13;UBERON:0003104!1.10e-08!61;UBERON:0009142!1.10e-08!61;UBERON:0005177!1.50e-07!79;UBERON:0009569!2.07e-07!66;UBERON:0004923!3.83e-07!24
}}
}}

Revision as of 20:14, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:20353102..20353117,+p@chr11:20353102..20353117
+
Mm9::chr12:85741801..85741850,-p2@Entpd5
Mm9::chr12:85741861..85741875,-p4@Entpd5
Mm9::chr12:85741879..85741896,-p3@Entpd5
Mm9::chr12:85741912..85741923,-p7@Entpd5
Mm9::chr14:17082189..17082203,-p3@Oxsm
Mm9::chr17:12868608..12868641,-p2@Slc22a1
Mm9::chr19:3986564..3986579,+p1@Acy3
Mm9::chr2:162813163..162813172,+p4@Sgk2
Mm9::chr2:162813210..162813222,+p2@Sgk2
Mm9::chr2:162813240..162813245,+p6@Sgk2
Mm9::chr2:162813255..162813273,+p1@Sgk2
Mm9::chr2:162813283..162813296,+p3@Sgk2
Mm9::chr4:116323994..116324014,-p3@Akr1a1
Mm9::chr4:118199834..118199852,+p2@2610528J11Rik
Mm9::chr7:150660999..150661020,+p4@Slc22a18
Mm9::chr7:150661025..150661067,+p2@Slc22a18
Mm9::chr7:36341052..36341089,-p4@Nudt19
Mm9::chr9:15105893..15105993,-p2@4931406C07Rik
Mm9::chr9:15105999..15106015,-p3@4931406C07Rik
Mm9::chr9:15110539..15110558,-p4@4931406C07Rik
Mm9::chr9:15110560..15110603,-p1@4931406C07Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019807aspartoacylase activity0.0347567648091107
GO:00043153-oxoacyl-[acyl-carrier-protein] synthase activity0.0347567648091107
GO:0004046aminoacylase activity0.0347567648091107
GO:0004312fatty-acid synthase activity0.0347567648091107
GO:0015101organic cation transmembrane transporter activity0.0347567648091107
GO:0042895antibiotic transporter activity0.0347567648091107
GO:0008493tetracycline transporter activity0.0347567648091107
GO:0015904tetracycline transport0.0347567648091107
GO:0015307drug:hydrogen antiporter activity0.0347567648091107
GO:0015520tetracycline:hydrogen antiporter activity0.0347567648091107
GO:0008514organic anion transmembrane transporter activity0.0347567648091107
GO:0046677response to antibiotic0.0347567648091107
GO:0017110nucleoside-diphosphatase activity0.0458029772383249



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine4.67e-1731
digestive tract diverticulum4.86e-1523
sac4.86e-1523
gastrointestinal system1.11e-1447
liver3.25e-1422
epithelial sac3.25e-1422
digestive gland3.25e-1422
epithelium of foregut-midgut junction3.25e-1422
anatomical boundary3.25e-1422
hepatobiliary system3.25e-1422
foregut-midgut junction3.25e-1422
hepatic diverticulum3.25e-1422
liver primordium3.25e-1422
septum transversum3.25e-1422
liver bud3.25e-1422
abdomen element5.06e-1349
abdominal segment element5.06e-1349
abdominal segment of trunk5.06e-1349
abdomen5.06e-1349
exocrine gland2.32e-1225
exocrine system2.32e-1225
endoderm-derived structure4.15e-12118
endoderm4.15e-12118
presumptive endoderm4.15e-12118
digestive system1.99e-11116
digestive tract1.99e-11116
primitive gut1.99e-11116
subdivision of digestive tract1.71e-10114
mucosa1.91e-1015
intestinal mucosa3.39e-0913
anatomical wall3.39e-0913
wall of intestine3.39e-0913
gastrointestinal system mucosa3.39e-0913
mesenchyme1.10e-0861
entire embryonic mesenchyme1.10e-0861
trunk region element1.50e-0779
subdivision of trunk2.07e-0766
organ component layer3.83e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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