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MCL coexpression mm9:382: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.0109350016075188,0,0,0,0,0,0,0.232851348147583,0.104160910348969,0.0913378685245542,0,0,0.291756795048922,0.238681978051139,0.165376613335303,0.147661033956106,0.0984597022890563,0.168904059950441,0.206210553111614,0.132186104082069,0.0374162388222694,1.15776952985632,1.11573883389614,0.0252860728272676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151839024235742,0,0.00969572434788545,0,0,0.17187568289743,0,0,0,0,0,0,0,0,0,0.101213895321,0.236880264493592,0.388083555496378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00432111547638988,0,0,0,0,0,0.114777023987052,0,0,0,0,0,0,0,0,0,0,0.0638737965431783,0.100004302423367,0,0.0694776635602275,0,0,0.00781202571642035,0,0,0,0,0.275221618407307,0.0591862865331596,0.166753876074892,0.171689969376673,0,0,0,0,0.82639534959729,0.713221333248462,0.704686382411805,0,0,0,0,0,0,0,0,0.242532914990722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0665344833539818,0.662986644980999,0.650535403676308,0.583324720886482,0,0,0,0,0,0,0,0,0,0,0,0,0.0081874938998011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0286742291608632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0987886013114579,0.167758869820135,0.169808064053953,0.206442762994762,0.168262215029059,0.190944653077189,0.13204946943989,0.242662968057859,0.175369359464433,0,0.01929843160489,0,0,0,0,0.0752364386259643,0,0,0,0,0.0672592169170953,0,0,0.0635717028550276,0,0,0.0659019793256198,0.0277424101923483,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0113260443992785,0.0117146879775233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268192740050004,0.0814866010703366,0.136843881272943,0.323129926083076,0.237878490931687,0.158208609291474,0.845657985084753,0.821348585452878,0.790484850564872,0,0,0,0,0,0,0.0041616132345628,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676561556755545,0.434772782699749,0.468794733537242,0.586144914153701,0.521468560667156,0.629912695848735,0.508267793132638,0.603641635302756,0.650912515687667,0.641780878061875,0.580312853819841,0.632461901659761,0.682833253253004,0.721240617577657,0,0,0,0,0,0.021100155892493,0.0405006254754142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0518281349676325,0.05156590872268,0,0,0,0,0,0.00327751075009529,0.098117166361508,0,0.0388749848471105,0.0269518943326477,0.051348237540245,0.0351854511286213,0.000973009096464085,0,0,0.0186272786152644,0,0.0495092865746273,0,0.0571006581254124,0.0390607415003592,0.0139551151960598,0.0150364450912904,0,0.00400147076832881,0,0.000310906119009039,0.0408018333703219,0,0.0359639154543566,0.0246297067502685,0,0,0.0697455566092589,0,0.0292111512711025,0.0905641158318875
|coexpression_dpi_cluster_scores_median=0.0109350016075188,0,0,0,0,0,0,0.232851348147583,0.104160910348969,0.0913378685245542,0,0,0.291756795048922,0.238681978051139,0.165376613335303,0.147661033956106,0.0984597022890563,0.168904059950441,0.206210553111614,0.132186104082069,0.0374162388222694,1.15776952985632,1.11573883389614,0.0252860728272676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151839024235742,0,0.00969572434788545,0,0,0.17187568289743,0,0,0,0,0,0,0,0,0,0.101213895321,0.236880264493592,0.388083555496378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00432111547638988,0,0,0,0,0,0.114777023987052,0,0,0,0,0,0,0,0,0,0,0.0638737965431783,0.100004302423367,0,0.0694776635602275,0,0,0.00781202571642035,0,0,0,0,0.275221618407307,0.0591862865331596,0.166753876074892,0.171689969376673,0,0,0,0,0.82639534959729,0.713221333248462,0.704686382411805,0,0,0,0,0,0,0,0,0.242532914990722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0665344833539818,0.662986644980999,0.650535403676308,0.583324720886482,0,0,0,0,0,0,0,0,0,0,0,0,0.0081874938998011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0286742291608632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0987886013114579,0.167758869820135,0.169808064053953,0.206442762994762,0.168262215029059,0.190944653077189,0.13204946943989,0.242662968057859,0.175369359464433,0,0.01929843160489,0,0,0,0,0.0752364386259643,0,0,0,0,0.0672592169170953,0,0,0.0635717028550276,0,0,0.0659019793256198,0.0277424101923483,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0113260443992785,0.0117146879775233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268192740050004,0.0814866010703366,0.136843881272943,0.323129926083076,0.237878490931687,0.158208609291474,0.845657985084753,0.821348585452878,0.790484850564872,0,0,0,0,0,0,0.0041616132345628,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676561556755545,0.434772782699749,0.468794733537242,0.586144914153701,0.521468560667156,0.629912695848735,0.508267793132638,0.603641635302756,0.650912515687667,0.641780878061875,0.580312853819841,0.632461901659761,0.682833253253004,0.721240617577657,0,0,0,0,0,0.021100155892493,0.0405006254754142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0518281349676325,0.05156590872268,0,0,0,0,0,0.00327751075009529,0.098117166361508,0,0.0388749848471105,0.0269518943326477,0.051348237540245,0.0351854511286213,0.000973009096464085,0,0,0.0186272786152644,0,0.0495092865746273,0,0.0571006581254124,0.0390607415003592,0.0139551151960598,0.0150364450912904,0,0.00400147076832881,0,0.000310906119009039,0.0408018333703219,0,0.0359639154543566,0.0246297067502685,0,0,0.0697455566092589,0,0.0292111512711025,0.0905641158318875
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!1.63e-10!32;CL:0002032!1.63e-10!32;CL:0000037!1.63e-10!32;CL:0000566!1.63e-10!32;CL:0000837!1.63e-10!32;CL:0000838!3.99e-07!12
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!7.18e-18!48;UBERON:0002405!7.18e-18!48;UBERON:0002390!1.52e-17!45;UBERON:0003061!1.52e-17!45;UBERON:0004177!3.89e-16!29;UBERON:0005057!3.89e-16!29;UBERON:0000077!1.04e-12!35;UBERON:0002370!6.28e-12!23;UBERON:0000974!6.28e-12!23;UBERON:0004807!6.28e-12!23;UBERON:0005058!6.28e-12!23;UBERON:0003351!6.28e-12!23;UBERON:0009113!6.28e-12!23;UBERON:0003295!6.28e-12!23;UBERON:0009722!6.28e-12!23;UBERON:0005562!6.28e-12!23;UBERON:0007690!6.28e-12!23;UBERON:0006562!3.75e-11!24;UBERON:0003408!3.75e-11!24;UBERON:0001557!3.75e-11!24;UBERON:0001042!3.75e-11!24;UBERON:0008814!3.75e-11!24;UBERON:0009145!3.75e-11!24;UBERON:0001041!2.10e-10!80;UBERON:0000072!3.42e-09!27;UBERON:0000065!4.80e-08!41;UBERON:0003929!8.45e-08!55;UBERON:0005911!9.79e-08!69;UBERON:0001004!1.13e-07!42;UBERON:0003081!1.43e-07!87;UBERON:0002368!1.44e-07!60
}}
}}

Revision as of 20:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:3191741..3191769,+p5@Patz1
Mm9::chr11:51457843..51457854,-p@chr11:51457843..51457854
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Mm9::chr13:45078358..45078373,-p2@Dtnbp1
Mm9::chr16:49855858..49855869,+p3@Cd47
Mm9::chr16:49856229..49856241,-p@chr16:49856229..49856241
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Mm9::chr17:84174896..84174943,+p@chr17:84174896..84174943
+
Mm9::chr1:162237435..162237453,-p@chr1:162237435..162237453
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Mm9::chr1:162237455..162237480,-p@chr1:162237455..162237480
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Mm9::chr1:162237482..162237522,-p@chr1:162237482..162237522
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Mm9::chr1:162237531..162237550,-p@chr1:162237531..162237550
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Mm9::chr1:162237551..162237568,-p@chr1:162237551..162237568
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Mm9::chr1:162237570..162237583,-p@chr1:162237570..162237583
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Mm9::chr2:180174574..180174609,-p@chr2:180174574..180174609
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Mm9::chr3:68496126..68496135,-p@chr3:68496126..68496135
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Mm9::chr5:148230164..148230205,+p1@D5Ertd605e
Mm9::chr5:148241798..148241820,+p3@Pan3
Mm9::chr5:148241866..148241878,+p4@Pan3
Mm9::chr7:134851564..134851598,-p4@Bcl7c
Mm9::chr7:142843670..142843678,-p3@5830432E09Rik
Mm9::chr7:53175526..53175563,-p@chr7:53175526..53175563
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system7.18e-1848
immune system7.18e-1848
hematopoietic system1.52e-1745
blood island1.52e-1745
hemopoietic organ3.89e-1629
immune organ3.89e-1629
mixed endoderm/mesoderm-derived structure1.04e-1235
thymus6.28e-1223
neck6.28e-1223
respiratory system epithelium6.28e-1223
hemolymphoid system gland6.28e-1223
pharyngeal epithelium6.28e-1223
thymic region6.28e-1223
pharyngeal gland6.28e-1223
entire pharyngeal arch endoderm6.28e-1223
thymus primordium6.28e-1223
early pharyngeal endoderm6.28e-1223
pharynx3.75e-1124
gland of gut3.75e-1124
upper respiratory tract3.75e-1124
chordate pharynx3.75e-1124
pharyngeal arch system3.75e-1124
pharyngeal region of foregut3.75e-1124
foregut2.10e-1080
segment of respiratory tract3.42e-0927
respiratory tract4.80e-0841
gut epithelium8.45e-0855
endo-epithelium9.79e-0869
respiratory system1.13e-0742
lateral plate mesoderm1.43e-0787
endocrine gland1.44e-0760


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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