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MCL coexpression mm9:444: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0042802;identical protein binding;0.00185395478476911;12737,240675!GO:0016338;calcium-independent cell-cell adhesion;0.0069020293440726;12737!GO:0005923;tight junction;0.0413168687193188;12737!GO:0043296;apical junction complex;0.0413168687193188;12737!GO:0016327;apicolateral plasma membrane;0.0413168687193188;12737!
|gostat_on_MCL_coexpression=GO:0042802;identical protein binding;0.00185395478476911;12737,240675!GO:0016338;calcium-independent cell-cell adhesion;0.0069020293440726;12737!GO:0005923;tight junction;0.0413168687193188;12737!GO:0043296;apical junction complex;0.0413168687193188;12737!GO:0016327;apicolateral plasma membrane;0.0413168687193188;12737!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000014!1.37e-12!5;UBERON:0001003!1.37e-12!5;UBERON:0002097!1.37e-12!5;UBERON:0002199!1.37e-12!5;UBERON:0007029!1.37e-12!5;UBERON:0007376!1.37e-12!5;UBERON:0002416!1.37e-12!5;UBERON:0007383!1.37e-12!5
}}
}}

Revision as of 20:42, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:110841223..110841234,+p@chr12:110841223..110841234
+
Mm9::chr13:113352237..113352245,-p@chr13:113352237..113352245
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Mm9::chr13:31876981..31876989,+p@chr13:31876981..31876989
+
Mm9::chr13:31877002..31877014,+p@chr13:31877002..31877014
+
Mm9::chr13:31895718..31895722,+p@chr13:31895718..31895722
+
Mm9::chr16:26371741..26371767,-p4@Cldn1
Mm9::chr17:31866495..31866498,-p@chr17:31866495..31866498
-
Mm9::chr19:46775834..46775873,-p@chr19:46775834..46775873
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Mm9::chr19:47021132..47021151,-p@chr19:47021132..47021151
-
Mm9::chr19:56948893..56948964,+p1@Vwa2
Mm9::chr1:176966501..176966506,+p@chr1:176966501..176966506
+
Mm9::chr2:74957367..74957378,-p@chr2:74957367..74957378
-
Mm9::chr3:138005248..138005264,+p@chr3:138005248..138005264
+
Mm9::chr3:92672917..92672929,-p@chr3:92672917..92672929
-
Mm9::chr5:68031122..68031132,+p@chr5:68031122..68031132
+
Mm9::chr7:108312709..108312714,+p@chr7:108312709..108312714
+
Mm9::chr8:125070382..125070401,+p@chr8:125070382..125070401
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042802identical protein binding0.00185395478476911
GO:0016338calcium-independent cell-cell adhesion0.0069020293440726
GO:0005923tight junction0.0413168687193188
GO:0043296apical junction complex0.0413168687193188
GO:0016327apicolateral plasma membrane0.0413168687193188



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
zone of skin1.37e-125
skin epidermis1.37e-125
skin of body1.37e-125
integument1.37e-125
surface1.37e-125
outer epithelium1.37e-125
integumental system1.37e-125
enveloping layer of ectoderm1.37e-125


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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