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MCL coexpression mm9:490: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0003735;structural constituent of ribosome;1.1560965530981e-11;27207,68193,20115,270106,269261,20091!GO:0005840;ribosome;1.1560965530981e-11;27207,68193,20115,270106,269261,20091!GO:0006412;translation;2.47125359463791e-09;27207,68193,20115,270106,269261,20091!GO:0030529;ribonucleoprotein complex;2.47125359463791e-09;27207,68193,20115,270106,269261,20091!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.28824516811436e-09;20115,270106,269261,20091!GO:0009059;macromolecule biosynthetic process;1.51370744461185e-08;27207,68193,20115,270106,269261,20091!GO:0044249;cellular biosynthetic process;6.13456154576301e-08;27207,68193,20115,270106,269261,20091!GO:0044445;cytosolic part;6.13456154576301e-08;20115,270106,269261,20091!GO:0042254;ribosome biogenesis and assembly;1.6730756480992e-07;20115,270106,269261,20091!GO:0009058;biosynthetic process;2.90028914512514e-07;27207,68193,20115,270106,269261,20091!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.4709628513972e-07;20115,270106,269261,20091!GO:0043232;intracellular non-membrane-bound organelle;1.01014948585804e-06;27207,68193,20115,270106,269261,20091!GO:0043228;non-membrane-bound organelle;1.01014948585804e-06;27207,68193,20115,270106,269261,20091!GO:0032991;macromolecular complex;5.48773926092803e-06;27207,68193,20115,270106,269261,20091!GO:0005829;cytosol;5.54327868465435e-06;20115,270106,269261,20091!GO:0044267;cellular protein metabolic process;2.60624487579232e-05;27207,68193,20115,270106,269261,20091!GO:0044260;cellular macromolecule metabolic process;2.60624487579232e-05;27207,68193,20115,270106,269261,20091!GO:0010467;gene expression;2.60624487579232e-05;27207,68193,20115,270106,269261,20091!GO:0019538;protein metabolic process;2.83025096999369e-05;27207,68193,20115,270106,269261,20091!GO:0044444;cytoplasmic part;5.50534752153308e-05;27207,68193,20115,270106,269261,20091!GO:0006996;organelle organization and biogenesis;0.000423234878212024;20115,270106,269261,20091!GO:0003723;RNA binding;0.00105955097781562;27207,20115,269261!GO:0005737;cytoplasm;0.00128464468842842;27207,68193,20115,270106,269261,20091!GO:0043170;macromolecule metabolic process;0.00128464468842842;27207,68193,20115,270106,269261,20091!GO:0044238;primary metabolic process;0.00286419718910655;27207,68193,20115,270106,269261,20091!GO:0044237;cellular metabolic process;0.00286419718910655;27207,68193,20115,270106,269261,20091!GO:0016043;cellular component organization and biogenesis;0.00562950163876434;20115,270106,269261,20091!GO:0043229;intracellular organelle;0.00562950163876434;27207,68193,20115,270106,269261,20091!GO:0043226;organelle;0.00562950163876434;27207,68193,20115,270106,269261,20091!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.00765632666923851;20115!GO:0019843;rRNA binding;0.0121575059345522;27207!GO:0044424;intracellular part;0.0148822751252279;27207,68193,20115,270106,269261,20091!GO:0015935;small ribosomal subunit;0.0148822751252279;20115!GO:0005622;intracellular;0.0173222684612825;27207,68193,20115,270106,269261,20091!GO:0033279;ribosomal subunit;0.0288723918971308;20115!GO:0005730;nucleolus;0.0481465775613396;269261!
|gostat_on_MCL_coexpression=GO:0003735;structural constituent of ribosome;1.1560965530981e-11;27207,68193,20115,270106,269261,20091!GO:0005840;ribosome;1.1560965530981e-11;27207,68193,20115,270106,269261,20091!GO:0006412;translation;2.47125359463791e-09;27207,68193,20115,270106,269261,20091!GO:0030529;ribonucleoprotein complex;2.47125359463791e-09;27207,68193,20115,270106,269261,20091!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.28824516811436e-09;20115,270106,269261,20091!GO:0009059;macromolecule biosynthetic process;1.51370744461185e-08;27207,68193,20115,270106,269261,20091!GO:0044249;cellular biosynthetic process;6.13456154576301e-08;27207,68193,20115,270106,269261,20091!GO:0044445;cytosolic part;6.13456154576301e-08;20115,270106,269261,20091!GO:0042254;ribosome biogenesis and assembly;1.6730756480992e-07;20115,270106,269261,20091!GO:0009058;biosynthetic process;2.90028914512514e-07;27207,68193,20115,270106,269261,20091!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.4709628513972e-07;20115,270106,269261,20091!GO:0043232;intracellular non-membrane-bound organelle;1.01014948585804e-06;27207,68193,20115,270106,269261,20091!GO:0043228;non-membrane-bound organelle;1.01014948585804e-06;27207,68193,20115,270106,269261,20091!GO:0032991;macromolecular complex;5.48773926092803e-06;27207,68193,20115,270106,269261,20091!GO:0005829;cytosol;5.54327868465435e-06;20115,270106,269261,20091!GO:0044267;cellular protein metabolic process;2.60624487579232e-05;27207,68193,20115,270106,269261,20091!GO:0044260;cellular macromolecule metabolic process;2.60624487579232e-05;27207,68193,20115,270106,269261,20091!GO:0010467;gene expression;2.60624487579232e-05;27207,68193,20115,270106,269261,20091!GO:0019538;protein metabolic process;2.83025096999369e-05;27207,68193,20115,270106,269261,20091!GO:0044444;cytoplasmic part;5.50534752153308e-05;27207,68193,20115,270106,269261,20091!GO:0006996;organelle organization and biogenesis;0.000423234878212024;20115,270106,269261,20091!GO:0003723;RNA binding;0.00105955097781562;27207,20115,269261!GO:0005737;cytoplasm;0.00128464468842842;27207,68193,20115,270106,269261,20091!GO:0043170;macromolecule metabolic process;0.00128464468842842;27207,68193,20115,270106,269261,20091!GO:0044238;primary metabolic process;0.00286419718910655;27207,68193,20115,270106,269261,20091!GO:0044237;cellular metabolic process;0.00286419718910655;27207,68193,20115,270106,269261,20091!GO:0016043;cellular component organization and biogenesis;0.00562950163876434;20115,270106,269261,20091!GO:0043229;intracellular organelle;0.00562950163876434;27207,68193,20115,270106,269261,20091!GO:0043226;organelle;0.00562950163876434;27207,68193,20115,270106,269261,20091!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.00765632666923851;20115!GO:0019843;rRNA binding;0.0121575059345522;27207!GO:0044424;intracellular part;0.0148822751252279;27207,68193,20115,270106,269261,20091!GO:0015935;small ribosomal subunit;0.0148822751252279;20115!GO:0005622;intracellular;0.0173222684612825;27207,68193,20115,270106,269261,20091!GO:0033279;ribosomal subunit;0.0288723918971308;20115!GO:0005730;nucleolus;0.0481465775613396;269261!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}
}}

Revision as of 20:46, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:97643723..97643734,-p2@LOC100044627
p2@Rpl23
Mm9::chr12:29320779..29320817,-p1@Rps7
Mm9::chr14:25309900..25309911,+p2@LOC677113
p2@Rps24
Mm9::chr15:34372984..34373027,-p1@Gm12191
p1@Gm6109
p1@Gm7429
p1@Rpl30-ps10
p1@Rpl30
Mm9::chr16:55966451..55966484,+p3@Rpl24
p3@Zbtb11
Mm9::chr2:32817185..32817212,+p1@Rpl12
Mm9::chr3:85946564..85946580,-p2@Rps3a
Mm9::chr3:85946606..85946611,-p3@Rps3a
Mm9::chr4:86503269..86503319,-p1@Gm13654
p1@LOC639593
p1@Rps6
Mm9::chr5:65782647..65782690,-p1@Gm5451
p1@Rpl9
Mm9::chr6:115758783..115758797,-p2@Gm6251
p2@LOC100504872
p2@Rpl32
Mm9::chr7:123477646..123477702,-p1@Gm12270
p1@Gm15483
p1@Gm6834
p1@Rps13
Mm9::chr7:52379725..52379769,-p1@Rps11
Mm9::chr8:125626259..125626320,+p1@Gm10071
p1@Gm12918
p1@Gm15710
p1@Rpl13
Mm9::chr9:44215712..44215766,+p1@Gm6988
p1@Rps25


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003735structural constituent of ribosome1.1560965530981e-11
GO:0005840ribosome1.1560965530981e-11
GO:0006412translation2.47125359463791e-09
GO:0030529ribonucleoprotein complex2.47125359463791e-09
GO:0005830cytosolic ribosome (sensu Eukaryota)6.28824516811436e-09
GO:0009059macromolecule biosynthetic process1.51370744461185e-08
GO:0044249cellular biosynthetic process6.13456154576301e-08
GO:0044445cytosolic part6.13456154576301e-08
GO:0042254ribosome biogenesis and assembly1.6730756480992e-07
GO:0009058biosynthetic process2.90028914512514e-07
GO:0022613ribonucleoprotein complex biogenesis and assembly7.4709628513972e-07
GO:0043232intracellular non-membrane-bound organelle1.01014948585804e-06
GO:0043228non-membrane-bound organelle1.01014948585804e-06
GO:0032991macromolecular complex5.48773926092803e-06
GO:0005829cytosol5.54327868465435e-06
GO:0044267cellular protein metabolic process2.60624487579232e-05
GO:0044260cellular macromolecule metabolic process2.60624487579232e-05
GO:0010467gene expression2.60624487579232e-05
GO:0019538protein metabolic process2.83025096999369e-05
GO:0044444cytoplasmic part5.50534752153308e-05
GO:0006996organelle organization and biogenesis0.000423234878212024
GO:0003723RNA binding0.00105955097781562
GO:0005737cytoplasm0.00128464468842842
GO:0043170macromolecule metabolic process0.00128464468842842
GO:0044238primary metabolic process0.00286419718910655
GO:0044237cellular metabolic process0.00286419718910655
GO:0016043cellular component organization and biogenesis0.00562950163876434
GO:0043229intracellular organelle0.00562950163876434
GO:0043226organelle0.00562950163876434
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota)0.00765632666923851
GO:0019843rRNA binding0.0121575059345522
GO:0044424intracellular part0.0148822751252279
GO:0015935small ribosomal subunit0.0148822751252279
GO:0005622intracellular0.0173222684612825
GO:0033279ribosomal subunit0.0288723918971308
GO:0005730nucleolus0.0481465775613396



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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