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|gostat_on_MCL_coexpression=GO:0030161;calpain inhibitor activity;0.0405925320326153;12380!GO:0042787;protein ubiquitination during ubiquitin-dependent protein catabolic process;0.0405925320326153;16924!GO:0000239;pachytene;0.0405925320326153;18426!GO:0030163;protein catabolic process;0.0405925320326153;12380,16924!GO:0045892;negative regulation of transcription, DNA-dependent;0.0405925320326153;18426,16600!GO:0043285;biopolymer catabolic process;0.0405925320326153;12380,16924!GO:0000279;M phase;0.0405925320326153;212307,18426!GO:0016481;negative regulation of transcription;0.0405925320326153;18426,16600!GO:0007128;meiotic prophase I;0.0405925320326153;18426!GO:0051324;prophase;0.0405925320326153;18426!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0405925320326153;18426,16600!GO:0032011;ARF protein signal transduction;0.0405925320326153;215632!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0405925320326153;215632!GO:0030165;PDZ domain binding;0.0405925320326153;16924!GO:0032012;regulation of ARF protein signal transduction;0.0405925320326153;215632!GO:0022403;cell cycle phase;0.0405925320326153;212307,18426!GO:0009057;macromolecule catabolic process;0.0420435605551518;12380,16924!GO:0031324;negative regulation of cellular metabolic process;0.0420435605551518;18426,16600!GO:0009892;negative regulation of metabolic process;0.0491480804908414;18426,16600!GO:0008092;cytoskeletal protein binding;0.0491480804908414;212307,69693!
|gostat_on_MCL_coexpression=GO:0030161;calpain inhibitor activity;0.0405925320326153;12380!GO:0042787;protein ubiquitination during ubiquitin-dependent protein catabolic process;0.0405925320326153;16924!GO:0000239;pachytene;0.0405925320326153;18426!GO:0030163;protein catabolic process;0.0405925320326153;12380,16924!GO:0045892;negative regulation of transcription, DNA-dependent;0.0405925320326153;18426,16600!GO:0043285;biopolymer catabolic process;0.0405925320326153;12380,16924!GO:0000279;M phase;0.0405925320326153;212307,18426!GO:0016481;negative regulation of transcription;0.0405925320326153;18426,16600!GO:0007128;meiotic prophase I;0.0405925320326153;18426!GO:0051324;prophase;0.0405925320326153;18426!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0405925320326153;18426,16600!GO:0032011;ARF protein signal transduction;0.0405925320326153;215632!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0405925320326153;215632!GO:0030165;PDZ domain binding;0.0405925320326153;16924!GO:0032012;regulation of ARF protein signal transduction;0.0405925320326153;215632!GO:0022403;cell cycle phase;0.0405925320326153;212307,18426!GO:0009057;macromolecule catabolic process;0.0420435605551518;12380,16924!GO:0031324;negative regulation of cellular metabolic process;0.0420435605551518;18426,16600!GO:0009892;negative regulation of metabolic process;0.0491480804908414;18426,16600!GO:0008092;cytoskeletal protein binding;0.0491480804908414;212307,69693!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!2.19e-16!47;UBERON:0000160!1.86e-14!31;UBERON:0004119!5.67e-14!118;UBERON:0000925!5.67e-14!118;UBERON:0006595!5.67e-14!118;UBERON:0001007!3.39e-13!116;UBERON:0001555!3.39e-13!116;UBERON:0007026!3.39e-13!116;UBERON:0004921!2.75e-12!114;UBERON:0000344!3.73e-09!15;UBERON:0001242!4.13e-08!13;UBERON:0000060!4.13e-08!13;UBERON:0001262!4.13e-08!13;UBERON:0004786!4.13e-08!13;UBERON:0004923!1.71e-07!24
}}
}}

Revision as of 21:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:74945361..74945437,-p1@Cast
Mm9::chr18:23912236..23912260,+p5@Mapre2
Mm9::chr19:5560600..5560617,-p1@Ovol1
Mm9::chr2:24223085..24223140,+p3@Psd4
Mm9::chr4:55545337..55545357,-p1@Klf4
Mm9::chr5:75098978..75098991,-p4@Lnx1
Mm9::chr9:76414899..76414930,-p1@Fam83b
Mm9::chr9:76414933..76414938,-p2@Fam83b
Mm9::chrX:109812273..109812298,-p2@Pof1b
Mm9::chrX:7318414..7318447,-p2@Ccdc120


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030161calpain inhibitor activity0.0405925320326153
GO:0042787protein ubiquitination during ubiquitin-dependent protein catabolic process0.0405925320326153
GO:0000239pachytene0.0405925320326153
GO:0030163protein catabolic process0.0405925320326153
GO:0045892negative regulation of transcription, DNA-dependent0.0405925320326153
GO:0043285biopolymer catabolic process0.0405925320326153
GO:0000279M phase0.0405925320326153
GO:0016481negative regulation of transcription0.0405925320326153
GO:0007128meiotic prophase I0.0405925320326153
GO:0051324prophase0.0405925320326153
GO:0045934negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0405925320326153
GO:0032011ARF protein signal transduction0.0405925320326153
GO:0005086ARF guanyl-nucleotide exchange factor activity0.0405925320326153
GO:0030165PDZ domain binding0.0405925320326153
GO:0032012regulation of ARF protein signal transduction0.0405925320326153
GO:0022403cell cycle phase0.0405925320326153
GO:0009057macromolecule catabolic process0.0420435605551518
GO:0031324negative regulation of cellular metabolic process0.0420435605551518
GO:0009892negative regulation of metabolic process0.0491480804908414
GO:0008092cytoskeletal protein binding0.0491480804908414



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gastrointestinal system2.19e-1647
intestine1.86e-1431
endoderm-derived structure5.67e-14118
endoderm5.67e-14118
presumptive endoderm5.67e-14118
digestive system3.39e-13116
digestive tract3.39e-13116
primitive gut3.39e-13116
subdivision of digestive tract2.75e-12114
mucosa3.73e-0915
intestinal mucosa4.13e-0813
anatomical wall4.13e-0813
wall of intestine4.13e-0813
gastrointestinal system mucosa4.13e-0813
organ component layer1.71e-0724


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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