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Coexpression cluster:C313: Difference between revisions

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|full_id=C313_blood_CD19_Adipocyte_acute_Osteoblast_Cardiac_Neurons
|full_id=C313_blood_CD19_Adipocyte_acute_Osteoblast_Cardiac_Neurons
|id=C313
|id=C313
|ontology_enrichment_celltype=CL:0000860!2.30e-07!45
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
|ontology_enrichment_uberon=
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1925,0.808892,0.767777,0.771538,0.978478,0.307592,0.999959,0.861636,0.394613,0.686256,0.511752,0.860608,0.975437,0.954936,0.93074,0.831335,0.998246,0.967547,0.426583,0.633191,0.909123,0.661102,0.922347,0.994308,0.867917,0.855141,0.901583,0.853333,0.692759,0.990837,0.98625,0.458715,0.717118,0.99943,0.835702,0.639741,0.768837,0.825022,0.832228,1,0.999471,0.490459,0.734496,0.478059,0.554441,0.630102,0.130534,0.860624,0.354948,0.623297,0.983592,0.999999,0.992225,0.955082,0.986777,0.799699,0.752769,0.916453,0.999957,0.528137,0.460782,0.986859,0.548637,0.91298,0.989205,0.608292,0.959653,0.987197,0.368044,0.817348,0.912678,1,1,0.946555,0.955748,0.765805,0.586528,0.767365,0.473659,0.720927,0.945935,0.63045,0.446725,0.772172,0.60267,0.96114,0.878808,0.385322,0.835061,0.441926,0.504414,0.784893,0.709398,0.909031,0.754483,0.958161,0.525574,0.966004,0.632485,0.98619,0.876803,0.935857,0.955804,0.742619,0.993378,0.909803,0.897119,0.875368,0.5595,0.932121,0.869626,0.999863,0.883003,0.611322,0.705091,0.54477,0.861096,0.873558,0.726862,0.881609,0.906021,0.934545,0.845804,0.962377,0.880908,0.986489,0.799164,0.670376,0.748755,0.781493,0.779945,0.926954,0.91225,0.716976,0.979432,0.973429,0.85314,0.735895,0.977016,0.749996,0.781254,0.279577,0.902541,0.699946,0.995629,0.901132,0.929212,0.658812,0.73075,0.883774,0.851091,0.998856,0.537708,0.972645,0.710407,0.955775,0.964145,0.998673,0.999995,0.372197,0.998806,0.831346,0.430398,0.837446,0.998951,0.997085,0.999474,0.998676,0.964366,0.999486,0.99456,0.997131,0.999121,0.999471,0.766649,0.987781,0.97723,0.998637,0.983758,0.9998,0.999009,0.99369,1,0.949,0.999793,0.998516,0.999399,0.905195,1,1,0.961729,0.994943,0.999933,0.985242,0.985631,0.999864,0.99759,0.99999,0.986722,0.662619,0.999617,0.928114,0.999765,0.997559,0.994439,0.900635,0.977258,0.995272,0.970774,1,0.949469,0.999999,0.999942,0.892751,1,0.999971,0.991951,1,0.981489,1,0.997515,1,0.999995,1,0.943907,0.94124,0.557534,0.473013,0.976606,0.999116,0.972076,0.94328,0.8835,0.85483,0.9988,0.722092,0.951546,0.974543,0.896308,0.843841,0.222465,0.985533,0.999972,0.855717,0.920785,0.985025,1,0.999995,0.998705,0.999899,0.992747,0.999858,0.96726,0.999449,0.99798,0.999113,1,0.999942,0.958427,0.966233,0.991456,0.984766,0.999952,0.999983,0.168706,0.999514,0.849502,0.999989,0.901039,0.938712,0.302018,0.991926,0.999751,0.912819,0.994072,0.997326,0.999134,0.990177,0.978736,0.996438,0.998125,0.977891,0.966955,0.943966,0.982498,0.936649,0.940641,0.972923,0.983083,0.999997,0.990195,0.969654,0.980787,0.990332,0.94302,0.999829,0.945967,0.993697,0.974274,0.997806,0.983367,0.999864,0.957188,0.998779,0.765268,0.932314,0.999627,0.999307,0.990451,0.99959,0.985332,0.999973,0.997267,0.98834,0.982462,0.997015,0.983007,0.997865,0.997547,0.996439,0.994794,0.151046,0.999993,0.997971,0.994055,0.999227,0.989066,0.999997,0.787393,0.9144,0.642028,0.915892,0.94556,0.352351,0.930318,0.977503,0.928782,0.611478,0.979715,0.656801,0.931806,0.895091,0.956626,0.947869,0.697483,0.362332,0.899858,0.9748,0.982968,0.976186,0.947465,0.999451,0.918294,0.934491,0.957654,0.959058,0.994986,0.948689,0.955617,0.769697,0.927143,0.811218,0.940278,0.342766,0.710842,0.813187,0.918894,0.961582,0.984054,0.677922,0.831409,0.948166,0.874635,0.958631,0.586441,0.948249,0.980288,0.781327,0.863942,0.963162,0.893634,0.962874,0.903776,0.39179,0.57946,0.492907,0.445974,0.981023,0.942264,0.972647,0.88145,0.802505,0.73177,0.76642,0.540608,0.954098,0.887585,0.957249,0.936136,0.813627,0.893273,0.84386,0.717406,0.88994,0.976896,0.61248,0.954967,0.812829,0.92427,0.925458,0.613642,0.977365,0.97859,0.944228,0.952509,0.947489,0.856002,0.933902,0.973452,0.790154,0.960108,0.972079,0.909865,0.941183,0.568311,0.938013,0.969321,0.88413,0.831314,0.976765,0.827845,0.908625,0.914924,0.725141,0.942752,0.990973,0.984666,0.955726,0.662776,0.942687,0.760634,0.502359,0.50348,0.874496,0.642593,0.409406,0.503226,0.99243,0.978583,0.950569,0.928188,0.965625,0.930208,0.658334,0.729656,0.568174,0.807331,0.566563,0.753283,0.580749,0.633836,0.825459,0.768761,0.43528,0.584297,0.695523,0.377623,0.840635,0.944769,0.935911,0.92687,0.995479,0.855708,0.979104,0.976364,0.940878,0.961971,0.988762,0.97536,0.916062,0.985381,0.97955,0.832982,0.891218,0.789469,0.940063,0.986197,0.967203,0.993135,0.789685,0.955648,0.959625,0.788062,0.935898,0.931757,0.984876,0.985269,0.973832,0.897574,0.959905,0.711915,0.993447,0.960873,0.947684,0.72103,0.314873,0.991988,0.907993,0.643256,0.981839,0.607167,0.981626,0.740487,0.958771,0.913798,0.885529,0.953931,0.97506,0.946127,0.922209
}}
}}

Revision as of 14:49, 19 October 2012


Full id: C313_blood_CD19_Adipocyte_acute_Osteoblast_Cardiac_Neurons



Phase1 CAGE Peaks

Hg19::chr10:111629613..111629617,+p1@RNU4-5P
Hg19::chr11:105695356..105695358,+p1@ENST00000410731
Hg19::chr11:62620503..62620506,-p1@SNORD22
Hg19::chr12:28472393..28472394,-p1@ENST00000516428
Hg19::chr12:98811813..98811817,-p1@ENST00000364426
Hg19::chr13:73765663..73765666,+p1@RNU4-10P
Hg19::chr14:62489552..62489557,-p@chr14:62489552..62489557
-
Hg19::chr16:19509930..19509934,+p1@ENST00000410818
Hg19::chr16:68363429..68363434,-p1@ENST00000410245
Hg19::chr16:68569416..68569420,+p1@ENST00000364294
Hg19::chr17:26929424..26929428,-p@chr17:26929424..26929428
-
Hg19::chr17:43291811..43291815,-p@chr17:43291811..43291815
-
Hg19::chr1:233584524..233584527,-p1@ENST00000516692
Hg19::chr1:48913605..48913611,+p1@ENST00000411243
Hg19::chr20:34475579..34475584,+p1@ENST00000364351
Hg19::chr22:38275807..38275811,-p@chr22:38275807..38275811
-
Hg19::chr2:128229807..128229811,+p1@ENST00000365559
Hg19::chr2:232576231..232576237,+p1@BC005228
Hg19::chr2:236577684..236577686,+p@chr2:236577684..236577686
+
Hg19::chr2:48567962..48567967,-p1@ENST00000516080
Hg19::chr3:172514350..172514351,-p1@RNU4-4P
Hg19::chr3:196474187..196474199,-p1@ENST00000365311
Hg19::chr4:138414465..138414468,-p@chr4:138414465..138414468
-
Hg19::chr5:90566542..90566546,+p1@ENST00000362773
Hg19::chr6:131049770..131049773,-p@chr6:131049770..131049773
-
Hg19::chr6:131964103..131964108,-p1@ENST00000516751
Hg19::chr6:148207840..148207848,+p@chr6:148207840..148207848
+
Hg19::chr6:150647895..150647900,-p1@RNU4-7P
Hg19::chr6:86461298..86461301,+p1@ENST00000410754
Hg19::chr7:140752047..140752051,+p1@ENST00000411280
Hg19::chr7:146799323..146799326,-p@chr7:146799323..146799326
-
Hg19::chr7:156664772..156664773,+p1@ENST00000384211
Hg19::chr7:94727537..94727541,+p1@ENST00000364737
Hg19::chr8:124467344..124467350,-p@chr8:124467344..124467350
-
Hg19::chr8:129022857..129022859,-p1@ENST00000410569
Hg19::chr8:23457648..23457650,-p1@ENST00000516258
Hg19::chr8:59727111..59727114,-p1@ENST00000364361
Hg19::chr9:127649825..127649830,-p1@ENST00000362443


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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