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<td>'''Sample classifications'''</td> | |||
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Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). | |||
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<td> <ul><li>[[CL:0000192|smooth muscle cell]]</li></ul> </td> | |||
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[[FF_Ontology_terms_list|FANTOM5 (FF)]] | |||
[[Cell_Ontology_terms_list|Cell Type (CL)]] | |||
[[Human_Disease_Ontology_terms_list|Disease (DOID)]] | |||
[[Uber_Anatomy_Ontology_terms_list|Anatomy (UBERON)]] | |||
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<td>'''Co-expression'''</td> | <td>'''Co-expression'''</td> | ||
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Revision as of 19:55, 22 November 2012
FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project
| Gene Search | |||
|---|---|---|---|
| Examples | Browse | ||
| Samples | Details of profiled samples (incl. primary cells, cell lines, and tissues) | ||
| Sample classifications |
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). |
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| Co-expression |
CAGE peaks (TSS regions) are grouped based on expression, by using MCL |
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| MOTIFs |
de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe |
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| Transcription factors |
Transcription factors. |
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