Coexpression cluster:C109: Difference between revisions
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|tf_chipseq_enrich=ATF3#467;25:3.20902493228696:2.99036018049575e-07:1.50947427206764e-05!BCL3#602;13:2.5663562082777:0.00188248528005793:0.0110913280020292!BCLAF1#9774;42:5.19663542642924:8.8765288503037e-19:2.0739503279572e-16!BRCA1#672;69:7.95835379647108:2.08531332636188e-43:1.30411999096951e-40!CCNT2#905;103:3.72930721386944:2.08502963204116e-38:1.13415838406639e-35!CEBPB#1051;58:2.64186607027337:1.29244564773917e-12:1.79496982718393e-10!CHD2#1106;127:7.50680514247338:2.23159292065808e-88:3.06664911895538e-85!CTCF#10664;60:1.83780218505429:6.84688254025659e-07:3.09693185630948e-05!CTCFL#140690;30:3.38510989010989:4.97262058296064e-09:4.00412892107808e-07!E2F1#1869;162:4.542840301774:7.18484573172608e-95:1.087504497646e-91!E2F4#1874;173:12.5232824831098:8.58749244045613e-188:3.09265214823724e-184!E2F6#1876;146:4.18574135330182:7.93067246808312e-73:9.10188463619927e-70!EGR1#1958;109:3.10692297905317:4.98344976916624e-34:2.34444374072952e-31!ELF1#1997;152:3.69846222707855:1.401575159797e-70:1.50906297024782e-67!ELK4#2005;65:6.03039604457384:1.61182012092964e-33:7.44853458450311e-31!EP300#2033;39:1.50962129898688:0.00504822920127289:0.0235140491281661!ETS1#2113;112:6.2264069902095:5.55822721625236e-66:5.6358805071668e-63!FOS#2353;99:5.09027186046026:2.66269186441772e-48:1.85392583751948e-45!FOSL2#2355;21:2.0316240725474:0.00164723367542335:0.0103052256995052!FOXA1#3169;47:2.97615273269209:6.5599742044369e-12:8.41667255451087e-10!GABPB1#2553;107:4.32138383126567:1.48721583193014e-46:9.83059077664253e-44!GATA1#2623;60:4.64924850644586:8.6134245134183e-25:2.70143376203271e-22!GATA3#2625;18:2.80147025388405:8.86092084179814e-05:0.00129811433833154!GTF2B#2959;51:9.30934472371735:1.59091594665046e-34:7.656851177522e-32!GTF2F1#2962;81:5.89664303438497:2.33394101551043e-42:1.41717712627264e-39!HDAC2#3066;42:3.2197488567903:1.01353963542501e-11:1.26618499981044e-09!HEY1#23462;174:4.01702469428796:3.1669055009569e-104:5.60590582397352e-101!HMGN3#9324;92:4.29957937456145:4.96750252920554e-38:2.66051793152665e-35!HNF4A#3172;22:2.90805935991418:7.84466453758008e-06:0.000222270461106979!HNF4G#3174;16:2.62888434527514:0.00044341949353159:0.00412968507980611!IRF1#3659;145:6.32793568152438:5.35057396385227e-97:8.59705529555027e-94!IRF3#3661;59:15.8396296027308:3.15371845060316e-53:2.49523637320109e-50!IRF4#3662;20:2.5045157356279:0.000160425289468072:0.00199697935718189!JUN#3725;29:2.07355455187288:0.00014349990315681:0.00186753724433572!JUNB#3726;18:3.14852221643875:1.98785029278891e-05:0.000444749564542805!JUND#3727;71:2.83783508498767:1.82185029473507e-17:3.83613352685153e-15!MAFF#23764;11:3.53982240793941:0.000328020801771982:0.0033425860587632!MAX#4149;122:4.49835298342211:5.21955440039163e-58:4.74021775671741e-55!MXI1#4601;115:6.54617564175611:1.00771093762089e-70:1.09629502723113e-67!MYC#4609;101:3.014002680186:1.8584620883681e-29:7.29683917470211e-27!NANOG#79923;29:4.84627757685353:2.37708926970677e-12:3.22416657453124e-10!NFKB1#4790;119:3.73188312845181:3.61329131684236e-47:2.43463568928838e-44!NFYA#4800;112:11.7923716478915:9.53009508608791e-96:1.46369647161167e-92!NFYB#4801;113:10.8220379294264:1.00395280161665e-92:1.45627537011169e-89!NR2C2#7182;22:4.10012251380171:2.65575752648744e-08:1.8295821920107e-06!NR3C1#2908;28:2.39568373298769:1.56205385861904e-05:0.000365865312716559!NRF1#4899;80:5.58184203323927:5.01013411436673e-40:2.89090274458755e-37!PAX5#5079;83:3.16327965193006:3.41061327980397e-24:1.04765011861602e-21!PBX3#5090;26:3.25587045631627:1.275059606794e-07:7.29276836111493e-06!POLR2A#5430;175:2.14745317655807:7.45180401329323e-59:7.1399904527003e-56!POLR3A#11128;5:9.6894888597641:0.000187157979374115:0.00226364704202121!POU2F2#5452;89:4.63111452079477:5.24579633641302e-39:2.92976322769326e-36!RDBP#7936;7:6.145536159601:0.000166674082182185:0.00204310733204522!REST#5978;61:3.36372429533605:3.52846814894721e-18:7.87413856854483e-16!RFX5#5993;98:6.74683006322925:1.02937066149038e-58:9.68526509147688e-56!RXRA#6256;31:3.55607503607504:8.26773034892817e-10:7.7720386130667e-08!SETDB1#9869;41:9.44640613313388:8.16302694049053e-28:2.96020267582601e-25!SIN3A#25942;173:5.34706890136582:1.05891772484641e-123:2.30400642219239e-120!SIX5#147912;50:4.88191867298829:2.65798444302232e-21:7.15456797022701e-19!SMARCB1#6598;34:3.5462419231963:1.16953039463378e-10:1.25922252458925e-08!SMARCC1#6599;12:2.99405892477473:0.000776284295806765:0.00608529276962867!SP1#6667;148:4.81920253694202:2.50216627875889e-83:3.18687492667439e-80!SP2#6668;64:9.56471972346318:1.06359170007262e-44:6.81475175238556e-42!SPI1#6688;54:2.53161982548701:5.43673498928498e-11:6.09235156165165e-09!SREBF1#6720;25:6.71512134864119:8.55049267509536e-14:1.35099077835746e-11!SRF#6722;59:4.65162009981658:2.36652336745363e-24:7.31234715897897e-22!STAT1#6772;32:3.78634742805928:8.87395170813282e-11:9.68429093464664e-09!STAT2#6773;19:7.0857808716707:4.01443221402395e-11:4.58211241530543e-09!STAT3#6774;39:2.34433791365152:3.99638107446564e-07:1.93320075514644e-05!TAF1#6872;175:3.34304628574529:1.55290626467304e-92:2.22169832022175e-89!TAF7#6879;105:6.85984164295435:9.11257895869824e-65:9.0638917511189e-62!TAL1#6886;21:3.58423400129282:5.08385600166115e-07:2.37775565139941e-05!TBP#6908;175:3.70677068709639:2.13192217071704e-100:3.71093032645861e-97!TCF12#6938;38:2.30919809304619:8.47043702266688e-07:3.68141478239828e-05!TCF7L2#6934;56:3.44645650020395:4.94469186355296e-17:1.01258563438747e-14!TFAP2A#7020;38:3.58690346386119:5.35713562656047e-12:6.96754530139912e-10!TFAP2C#7022;58:3.58248719641082:1.82590427657175e-18:4.13656435446589e-16!THAP1#55145;30:5.37756764620308:6.86188160132018e-14:1.09411916421417e-11!TRIM28#10155;41:4.35549443917579:1.07666014070838e-15:2.02239763373097e-13!USF1#7391;88:3.19892535082457:2.18067284018526e-26:7.3943925570165e-24!USF2#7392;37:2.74692173284329:1.62547353457485e-08:1.1821924127957e-06!WRNIP1#56897;8:5.02034122740005:0.000226010408440665:0.00249490551179946!YY1#7528;146:4.09731959702093:1.5434855608852e-71:1.71489455843924e-68!ZBTB33#10009;44:7.96141657896669:6.83557709403704e-27:2.35610837004665e-24!ZBTB7A#51341;69:2.89875281281964:2.20434489150265e-17:4.60439152247289e-15!ZEB1#6935;38:3.66720238095238:2.77963020458267e-12:3.71705248318066e-10!ZNF143#7702;64:4.93746342481478:4.65397501926886e-28:1.69357664472969e-25!ZNF263#10127;59:2.77193518047789:9.55797559135582e-14:1.50109084629415e-11!ZZZ3#26009;4:5.47230199851962:0.00649622629937089:0.0278239574507872 | |tf_chipseq_enrich=ATF3#467;25:3.20902493228696:2.99036018049575e-07:1.50947427206764e-05!BCL3#602;13:2.5663562082777:0.00188248528005793:0.0110913280020292!BCLAF1#9774;42:5.19663542642924:8.8765288503037e-19:2.0739503279572e-16!BRCA1#672;69:7.95835379647108:2.08531332636188e-43:1.30411999096951e-40!CCNT2#905;103:3.72930721386944:2.08502963204116e-38:1.13415838406639e-35!CEBPB#1051;58:2.64186607027337:1.29244564773917e-12:1.79496982718393e-10!CHD2#1106;127:7.50680514247338:2.23159292065808e-88:3.06664911895538e-85!CTCF#10664;60:1.83780218505429:6.84688254025659e-07:3.09693185630948e-05!CTCFL#140690;30:3.38510989010989:4.97262058296064e-09:4.00412892107808e-07!E2F1#1869;162:4.542840301774:7.18484573172608e-95:1.087504497646e-91!E2F4#1874;173:12.5232824831098:8.58749244045613e-188:3.09265214823724e-184!E2F6#1876;146:4.18574135330182:7.93067246808312e-73:9.10188463619927e-70!EGR1#1958;109:3.10692297905317:4.98344976916624e-34:2.34444374072952e-31!ELF1#1997;152:3.69846222707855:1.401575159797e-70:1.50906297024782e-67!ELK4#2005;65:6.03039604457384:1.61182012092964e-33:7.44853458450311e-31!EP300#2033;39:1.50962129898688:0.00504822920127289:0.0235140491281661!ETS1#2113;112:6.2264069902095:5.55822721625236e-66:5.6358805071668e-63!FOS#2353;99:5.09027186046026:2.66269186441772e-48:1.85392583751948e-45!FOSL2#2355;21:2.0316240725474:0.00164723367542335:0.0103052256995052!FOXA1#3169;47:2.97615273269209:6.5599742044369e-12:8.41667255451087e-10!GABPB1#2553;107:4.32138383126567:1.48721583193014e-46:9.83059077664253e-44!GATA1#2623;60:4.64924850644586:8.6134245134183e-25:2.70143376203271e-22!GATA3#2625;18:2.80147025388405:8.86092084179814e-05:0.00129811433833154!GTF2B#2959;51:9.30934472371735:1.59091594665046e-34:7.656851177522e-32!GTF2F1#2962;81:5.89664303438497:2.33394101551043e-42:1.41717712627264e-39!HDAC2#3066;42:3.2197488567903:1.01353963542501e-11:1.26618499981044e-09!HEY1#23462;174:4.01702469428796:3.1669055009569e-104:5.60590582397352e-101!HMGN3#9324;92:4.29957937456145:4.96750252920554e-38:2.66051793152665e-35!HNF4A#3172;22:2.90805935991418:7.84466453758008e-06:0.000222270461106979!HNF4G#3174;16:2.62888434527514:0.00044341949353159:0.00412968507980611!IRF1#3659;145:6.32793568152438:5.35057396385227e-97:8.59705529555027e-94!IRF3#3661;59:15.8396296027308:3.15371845060316e-53:2.49523637320109e-50!IRF4#3662;20:2.5045157356279:0.000160425289468072:0.00199697935718189!JUN#3725;29:2.07355455187288:0.00014349990315681:0.00186753724433572!JUNB#3726;18:3.14852221643875:1.98785029278891e-05:0.000444749564542805!JUND#3727;71:2.83783508498767:1.82185029473507e-17:3.83613352685153e-15!MAFF#23764;11:3.53982240793941:0.000328020801771982:0.0033425860587632!MAX#4149;122:4.49835298342211:5.21955440039163e-58:4.74021775671741e-55!MXI1#4601;115:6.54617564175611:1.00771093762089e-70:1.09629502723113e-67!MYC#4609;101:3.014002680186:1.8584620883681e-29:7.29683917470211e-27!NANOG#79923;29:4.84627757685353:2.37708926970677e-12:3.22416657453124e-10!NFKB1#4790;119:3.73188312845181:3.61329131684236e-47:2.43463568928838e-44!NFYA#4800;112:11.7923716478915:9.53009508608791e-96:1.46369647161167e-92!NFYB#4801;113:10.8220379294264:1.00395280161665e-92:1.45627537011169e-89!NR2C2#7182;22:4.10012251380171:2.65575752648744e-08:1.8295821920107e-06!NR3C1#2908;28:2.39568373298769:1.56205385861904e-05:0.000365865312716559!NRF1#4899;80:5.58184203323927:5.01013411436673e-40:2.89090274458755e-37!PAX5#5079;83:3.16327965193006:3.41061327980397e-24:1.04765011861602e-21!PBX3#5090;26:3.25587045631627:1.275059606794e-07:7.29276836111493e-06!POLR2A#5430;175:2.14745317655807:7.45180401329323e-59:7.1399904527003e-56!POLR3A#11128;5:9.6894888597641:0.000187157979374115:0.00226364704202121!POU2F2#5452;89:4.63111452079477:5.24579633641302e-39:2.92976322769326e-36!RDBP#7936;7:6.145536159601:0.000166674082182185:0.00204310733204522!REST#5978;61:3.36372429533605:3.52846814894721e-18:7.87413856854483e-16!RFX5#5993;98:6.74683006322925:1.02937066149038e-58:9.68526509147688e-56!RXRA#6256;31:3.55607503607504:8.26773034892817e-10:7.7720386130667e-08!SETDB1#9869;41:9.44640613313388:8.16302694049053e-28:2.96020267582601e-25!SIN3A#25942;173:5.34706890136582:1.05891772484641e-123:2.30400642219239e-120!SIX5#147912;50:4.88191867298829:2.65798444302232e-21:7.15456797022701e-19!SMARCB1#6598;34:3.5462419231963:1.16953039463378e-10:1.25922252458925e-08!SMARCC1#6599;12:2.99405892477473:0.000776284295806765:0.00608529276962867!SP1#6667;148:4.81920253694202:2.50216627875889e-83:3.18687492667439e-80!SP2#6668;64:9.56471972346318:1.06359170007262e-44:6.81475175238556e-42!SPI1#6688;54:2.53161982548701:5.43673498928498e-11:6.09235156165165e-09!SREBF1#6720;25:6.71512134864119:8.55049267509536e-14:1.35099077835746e-11!SRF#6722;59:4.65162009981658:2.36652336745363e-24:7.31234715897897e-22!STAT1#6772;32:3.78634742805928:8.87395170813282e-11:9.68429093464664e-09!STAT2#6773;19:7.0857808716707:4.01443221402395e-11:4.58211241530543e-09!STAT3#6774;39:2.34433791365152:3.99638107446564e-07:1.93320075514644e-0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}} | }} |
Revision as of 13:27, 26 November 2012
Full id: C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
p.value | FDR | nGenes | nPathway | Name |
---|---|---|---|---|
2.31343570961464e-10 | 1.62711644909563e-08 | 7 | 36 | DNA replication (KEGG):03030 |
0.00131437538138314 | 0.0297142720148403 | 3 | 48 | Nucleotide excision repair (KEGG):03420 |
0.000146045833984494 | 0.00401943534400802 | 3 | 23 | Mismatch repair (KEGG):03430 |
2.50936800427164e-09 | 1.22186918977227e-07 | 6 | 28 | Homologous recombination (KEGG):03440 |
6.217767888903e-19 | 6.55974512279266e-17 | 16 | 128 | Cell cycle (KEGG):04110 |
2.40370996796524e-09 | 1.22186918977227e-07 | 9 | 114 | Oocyte meiosis (KEGG):04114 |
0.000266109866778311 | 0.00647875175656426 | 4 | 69 | p53 signaling pathway (KEGG):04115 |
1.34017792648792e-07 | 5.30207892166785e-06 | 7 | 87 | Progesterone-mediated oocyte maturation (KEGG):04914 |
5.22281401175305e-08 | 2.20402751295979e-06 | 7 | 76 | miRNA regulation of DNA Damage Response (Wikipathways):WP1530 |
8.82301560789768e-20 | 1.11699377595985e-17 | 15 | 90 | Cell cycle (Wikipathways):WP179 |
0.00175246598485342 | 0.0382521023590419 | 2 | 14 | Homologous recombination (Wikipathways):WP186 |
2.80885767520302e-05 | 0.000889003454201755 | 4 | 39 | Integrated Cancer pathway (Wikipathways):WP1971 |
7.0545386535583e-05 | 0.00202978316713746 | 6 | 154 | Integrated Breast Cancer Pathway (Wikipathways):WP1984 |
8.70873611360441e-10 | 5.51262995991159e-08 | 8 | 69 | G1 to S cell cycle control (Wikipathways):WP45 |
3.6142208280362e-17 | 2.85975223018364e-15 | 11 | 42 | DNA Replication (Wikipathways):WP1806 |
3.9360777656576e-08 | 1.7796694469009e-06 | 7 | 73 | DNA damage response (Wikipathways):WP707 |
3.27626103736562e-21 | 5.1846830916311e-19 | 17 | 117 | Cell Cycle Checkpoints (Reactome):REACT_1538 |
5.55321508771031e-07 | 1.95288063917812e-05 | 7 | 107 | DNA Repair (Reactome):REACT_216 |
9.67074292974412e-52 | 2.04052675817601e-49 | 38 | 200 | DNA Replication (Reactome):REACT_383 |
0.00123284040675209 | 0.0289032584249658 | 8 | 466 | Hemostasis (Reactome):REACT_604 |
2.08689143505558e-57 | 6.60501139195093e-55 | 46 | 315 | Cell Cycle, Mitotic (Reactome):REACT_152 |
1.82162659627157e-05 | 0.000606889281810474 | 6 | 121 | Signaling by Rho GTPases (Reactome):REACT_11044 |
2.28599762443868e-17 | 2.06719499467098e-15 | 13 | 77 | Chromosome Maintenance (Reactome):REACT_22172 |
0.000176262519324361 | 0.00464892394718001 | 6 | 182 | B Cell Receptor down reg. targets (Netpath):NetPath_12 |
0.000238070252451706 | 0.0060279387920772 | 3 | 27 | {BRCA1,28} (Static Module):NA |
1.03207338782276e-69 | 6.53302454491809e-67 | 54 | 346 | {CDC2,351} (Static Module):NA |
4.20069059276908e-07 | 1.5641394971899e-05 | 5 | 34 | {PCNA,34} (Static Module):NA |
2.98112966926262e-05 | 0.000898597657449161 | 6 | 132 | {RAC1,133} (Static Module):NA |
2.09519054893877e-09 | 1.20568692498022e-07 | 5 | 13 | {RAD51,13} (Static Module):NA |
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0043228 | non-membrane-bound organelle | 2.15518128958986e-59 |
GO:0043232 | intracellular non-membrane-bound organelle | 2.15518128958986e-59 |
GO:0007049 | cell cycle | 8.29423306508336e-56 |
GO:0005634 | nucleus | 1.86808589481256e-52 |
GO:0000279 | M phase | 1.53273446325409e-49 |
GO:0022402 | cell cycle process | 3.94233316758286e-48 |
GO:0022403 | cell cycle phase | 3.94233316758286e-48 |
GO:0007067 | mitosis | 1.24072904823095e-44 |
GO:0000087 | M phase of mitotic cell cycle | 2.69401264475003e-44 |
GO:0000278 | mitotic cell cycle | 2.17076237247296e-43 |
GO:0051301 | cell division | 1.52606393838568e-42 |
GO:0005694 | chromosome | 1.42312296784697e-35 |
GO:0044446 | intracellular organelle part | 2.56266026444042e-34 |
GO:0044422 | organelle part | 3.16335014919152e-34 |
GO:0044427 | chromosomal part | 9.3662476807613e-32 |
GO:0043231 | intracellular membrane-bound organelle | 8.73105267505752e-31 |
GO:0043227 | membrane-bound organelle | 8.73105267505752e-31 |
GO:0043229 | intracellular organelle | 4.01532329582802e-30 |
GO:0043226 | organelle | 4.02546046526679e-30 |
GO:0000775 | chromosome, pericentric region | 1.30546540232514e-29 |
GO:0044424 | intracellular part | 1.35992297167859e-26 |
GO:0015630 | microtubule cytoskeleton | 8.74964046884234e-25 |
GO:0005622 | intracellular | 2.62522268128061e-24 |
GO:0007059 | chromosome segregation | 1.95014568800382e-23 |
GO:0006974 | response to DNA damage stimulus | 2.3449883656529e-22 |
GO:0009719 | response to endogenous stimulus | 1.30874503929204e-20 |
GO:0005524 | ATP binding | 6.64452256386793e-20 |
GO:0006259 | DNA metabolic process | 8.40253301098569e-20 |
GO:0032559 | adenyl ribonucleotide binding | 1.09903823723239e-19 |
GO:0006281 | DNA repair | 1.09903823723239e-19 |
GO:0005819 | spindle | 1.28482154870443e-19 |
GO:0030554 | adenyl nucleotide binding | 1.82423453905961e-18 |
GO:0000074 | regulation of progression through cell cycle | 5.92427682728953e-18 |
GO:0000075 | cell cycle checkpoint | 7.77717761579947e-18 |
GO:0051726 | regulation of cell cycle | 7.77717761579947e-18 |
GO:0044430 | cytoskeletal part | 3.36174037169177e-17 |
GO:0000070 | mitotic sister chromatid segregation | 3.69933808036147e-15 |
GO:0000819 | sister chromatid segregation | 5.20876431957014e-15 |
GO:0007088 | regulation of mitosis | 5.27727488475924e-15 |
GO:0032555 | purine ribonucleotide binding | 8.93129554296225e-14 |
GO:0032553 | ribonucleotide binding | 8.93129554296225e-14 |
GO:0007017 | microtubule-based process | 1.22738846048736e-13 |
GO:0005856 | cytoskeleton | 1.48532172045741e-13 |
GO:0007093 | mitotic cell cycle checkpoint | 3.29762076379665e-13 |
GO:0017076 | purine nucleotide binding | 6.06207757108282e-13 |
GO:0006260 | DNA replication | 7.1339209223488e-13 |
GO:0006996 | organelle organization and biogenesis | 8.44552503940277e-13 |
GO:0006950 | response to stress | 2.15899416025771e-12 |
GO:0007051 | spindle organization and biogenesis | 2.23721019119342e-12 |
GO:0030261 | chromosome condensation | 5.03246751797012e-12 |
GO:0007076 | mitotic chromosome condensation | 6.96427347628013e-11 |
GO:0000793 | condensed chromosome | 8.84118522817317e-11 |
GO:0008094 | DNA-dependent ATPase activity | 1.05903513286545e-10 |
GO:0000166 | nucleotide binding | 1.71364476196475e-10 |
GO:0005874 | microtubule | 2.43281648944147e-10 |
GO:0000226 | microtubule cytoskeleton organization and biogenesis | 6.63421668675064e-10 |
GO:0007010 | cytoskeleton organization and biogenesis | 1.19245827631345e-09 |
GO:0044464 | cell part | 1.53599888073301e-09 |
GO:0016043 | cellular component organization and biogenesis | 2.13974566956899e-09 |
GO:0000724 | double-strand break repair via homologous recombination | 2.96922346837678e-09 |
GO:0000725 | recombinational repair | 2.96922346837678e-09 |
GO:0008283 | cell proliferation | 3.87278249233788e-09 |
GO:0000776 | kinetochore | 7.94909266643582e-09 |
GO:0005657 | replication fork | 9.60513227346902e-09 |
GO:0006310 | DNA recombination | 1.11732587265106e-08 |
GO:0005515 | protein binding | 1.52399442452446e-08 |
GO:0043283 | biopolymer metabolic process | 2.48585407926928e-08 |
GO:0051276 | chromosome organization and biogenesis | 2.57860114189502e-08 |
GO:0051327 | M phase of meiotic cell cycle | 2.89119153344663e-08 |
GO:0007126 | meiosis | 2.89119153344663e-08 |
GO:0051321 | meiotic cell cycle | 3.49551220825024e-08 |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 3.59868454642563e-08 |
GO:0006261 | DNA-dependent DNA replication | 3.69792828985864e-08 |
GO:0051325 | interphase | 1.79166663750537e-07 |
GO:0003777 | microtubule motor activity | 2.00138784586914e-07 |
GO:0005815 | microtubule organizing center | 2.73565707741404e-07 |
GO:0000940 | outer kinetochore of condensed chromosome | 2.98135119039631e-07 |
GO:0000228 | nuclear chromosome | 3.30848161326164e-07 |
GO:0000922 | spindle pole | 4.62284572448948e-07 |
GO:0006302 | double-strand break repair | 9.87756007666849e-07 |
GO:0005875 | microtubule associated complex | 1.20207765213801e-06 |
GO:0007018 | microtubule-based movement | 1.20207765213801e-06 |
GO:0048015 | phosphoinositide-mediated signaling | 1.90511534744426e-06 |
GO:0030705 | cytoskeleton-dependent intracellular transport | 2.25175816313266e-06 |
GO:0005876 | spindle microtubule | 2.51025380852151e-06 |
GO:0051329 | interphase of mitotic cell cycle | 2.92980899284801e-06 |
GO:0051052 | regulation of DNA metabolic process | 4.45032284934026e-06 |
GO:0044428 | nuclear part | 5.00588919928186e-06 |
GO:0007094 | mitotic cell cycle spindle assembly checkpoint | 5.0744186592941e-06 |
GO:0031577 | spindle checkpoint | 8.57632997968865e-06 |
GO:0000777 | condensed chromosome kinetochore | 1.34042286242483e-05 |
GO:0000779 | condensed chromosome, pericentric region | 1.34042286242483e-05 |
GO:0031570 | DNA integrity checkpoint | 1.46901434709264e-05 |
GO:0006266 | DNA ligation | 1.96490756808257e-05 |
GO:0004674 | protein serine/threonine kinase activity | 2.23465936961939e-05 |
GO:0005737 | cytoplasm | 2.88681573191223e-05 |
GO:0005813 | centrosome | 2.95529306893487e-05 |
GO:0006270 | DNA replication initiation | 4.40528405003002e-05 |
GO:0003677 | DNA binding | 7.57397595067423e-05 |
GO:0007098 | centrosome cycle | 7.87661247352791e-05 |
GO:0042770 | DNA damage response, signal transduction | 7.87661247352791e-05 |
GO:0006268 | DNA unwinding during replication | 0.000119102868645461 |
GO:0000079 | regulation of cyclin-dependent protein kinase activity | 0.000130714567065669 |
GO:0032508 | DNA duplex unwinding | 0.000164944339934614 |
GO:0032392 | DNA geometric change | 0.000164944339934614 |
GO:0051297 | centrosome organization and biogenesis | 0.000164944339934614 |
GO:0031023 | microtubule organizing center organization and biogenesis | 0.000164944339934614 |
GO:0019932 | second-messenger-mediated signaling | 0.000181627029065354 |
GO:0051053 | negative regulation of DNA metabolic process | 0.000188655812443518 |
GO:0000796 | condensin complex | 0.000188655812443518 |
GO:0051382 | kinetochore assembly | 0.000188655812443518 |
GO:0003697 | single-stranded DNA binding | 0.000288152877261799 |
GO:0050794 | regulation of cellular process | 0.000320079258175086 |
GO:0051656 | establishment of organelle localization | 0.000332762769084155 |
GO:0042623 | ATPase activity, coupled | 0.000353537639402919 |
GO:0051383 | kinetochore organization and biogenesis | 0.000354901971386742 |
GO:0033205 | cytokinesis during cell cycle | 0.000354901971386742 |
GO:0051310 | metaphase plate congression | 0.000354901971386742 |
GO:0000077 | DNA damage checkpoint | 0.000412622661425027 |
GO:0008022 | protein C-terminus binding | 0.000575271098363951 |
GO:0007089 | traversing start control point of mitotic cell cycle | 0.000576072872022911 |
GO:0017111 | nucleoside-triphosphatase activity | 0.000592430028873947 |
GO:0016462 | pyrophosphatase activity | 0.000798390944113317 |
GO:0043234 | protein complex | 0.000798390944113317 |
GO:0007346 | regulation of progression through mitotic cell cycle | 0.000798390944113317 |
GO:0003689 | DNA clamp loader activity | 0.000798390944113317 |
GO:0000076 | DNA replication checkpoint | 0.000798390944113317 |
GO:0033170 | DNA-protein loading ATPase activity | 0.000798390944113317 |
GO:0051303 | establishment of chromosome localization | 0.000798390944113317 |
GO:0050000 | chromosome localization | 0.000798390944113317 |
GO:0032297 | negative regulation of DNA replication initiation | 0.000798390944113317 |
GO:0042127 | regulation of cell proliferation | 0.00079921524351734 |
GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.00084904051791595 |
GO:0051640 | organelle localization | 0.00085597300070837 |
GO:0016817 | hydrolase activity, acting on acid anhydrides | 0.000889593284379261 |
GO:0051298 | centrosome duplication | 0.00106037618612802 |
GO:0005663 | DNA replication factor C complex | 0.00106037618612802 |
GO:0005658 | alpha DNA polymerase:primase complex | 0.00106037618612802 |
GO:0016887 | ATPase activity | 0.00109449833016032 |
GO:0043170 | macromolecule metabolic process | 0.00118687498708238 |
GO:0030174 | regulation of DNA replication initiation | 0.001372161798568 |
GO:0006312 | mitotic recombination | 0.001372161798568 |
GO:0050789 | regulation of biological process | 0.00168140527586666 |
GO:0046982 | protein heterodimerization activity | 0.00185275933154499 |
GO:0004672 | protein kinase activity | 0.00189632994111611 |
GO:0006468 | protein amino acid phosphorylation | 0.00201806838536671 |
GO:0051054 | positive regulation of DNA metabolic process | 0.00212314018624588 |
GO:0007052 | mitotic spindle organization and biogenesis | 0.00257237350712999 |
GO:0003682 | chromatin binding | 0.00278507133020501 |
GO:0000785 | chromatin | 0.00302786147480926 |
GO:0051649 | establishment of cellular localization | 0.00421071359286775 |
GO:0043601 | nuclear replisome | 0.00468421402231235 |
GO:0030894 | replisome | 0.00468421402231235 |
GO:0033261 | regulation of progression through S phase | 0.00468421402231235 |
GO:0048522 | positive regulation of cellular process | 0.00499397381338526 |
GO:0051641 | cellular localization | 0.00499397381338526 |
GO:0065007 | biological regulation | 0.00542214046497148 |
GO:0043596 | nuclear replication fork | 0.00576384696943171 |
GO:0008156 | negative regulation of DNA replication | 0.00576384696943171 |
GO:0000086 | G2/M transition of mitotic cell cycle | 0.00576384696943171 |
GO:0000080 | G1 phase of mitotic cell cycle | 0.00576384696943171 |
GO:0044454 | nuclear chromosome part | 0.00576384696943171 |
GO:0043687 | post-translational protein modification | 0.00684593311705418 |
GO:0051318 | G1 phase | 0.00711352113024182 |
GO:0043566 | structure-specific DNA binding | 0.00760471132835482 |
GO:0016310 | phosphorylation | 0.00818907869390538 |
GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 0.00838544504449168 |
GO:0000152 | nuclear ubiquitin ligase complex | 0.00844732132254237 |
GO:0051320 | S phase | 0.00844732132254237 |
GO:0007131 | meiotic recombination | 0.00921898087522519 |
GO:0006793 | phosphorus metabolic process | 0.00935115302739534 |
GO:0006796 | phosphate metabolic process | 0.00935115302739534 |
GO:0048518 | positive regulation of biological process | 0.00984907154872842 |
GO:0044450 | microtubule organizing center part | 0.00984907154872842 |
GO:0001669 | acrosome | 0.0106616800943349 |
GO:0044237 | cellular metabolic process | 0.0108123996402835 |
GO:0045145 | single-stranded DNA specific 5'-3' exodeoxyribonuclease activity | 0.0108123996402835 |
GO:0033260 | DNA replication during S phase | 0.0108123996402835 |
GO:0046606 | negative regulation of centrosome cycle | 0.0108123996402835 |
GO:0046599 | regulation of centriole replication | 0.0108123996402835 |
GO:0043140 | ATP-dependent 3'-5' DNA helicase activity | 0.0108123996402835 |
GO:0015616 | DNA translocase activity | 0.0108123996402835 |
GO:0051352 | negative regulation of ligase activity | 0.0108123996402835 |
GO:0051436 | negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle | 0.0108123996402835 |
GO:0045870 | positive regulation of retroviral genome replication | 0.0108123996402835 |
GO:0019035 | viral integration complex | 0.0108123996402835 |
GO:0045922 | negative regulation of fatty acid metabolic process | 0.0108123996402835 |
GO:0045717 | negative regulation of fatty acid biosynthetic process | 0.0108123996402835 |
GO:0051105 | regulation of DNA ligation | 0.0108123996402835 |
GO:0046605 | regulation of centrosome cycle | 0.0108123996402835 |
GO:0009330 | DNA topoisomerase complex (ATP-hydrolyzing) | 0.0108123996402835 |
GO:0051439 | regulation of ubiquitin-protein ligase activity during mitotic cell cycle | 0.0108123996402835 |
GO:0000915 | cytokinesis, contractile ring formation | 0.0108123996402835 |
GO:0045910 | negative regulation of DNA recombination | 0.0108123996402835 |
GO:0051444 | negative regulation of ubiquitin-protein ligase activity | 0.0108123996402835 |
GO:0001675 | acrosome formation | 0.0108123996402835 |
GO:0045950 | negative regulation of mitotic recombination | 0.0108123996402835 |
GO:0033262 | regulation of DNA replication during S phase | 0.0108123996402835 |
GO:0007108 | initiation of separation involved in cytokinesis | 0.0108123996402835 |
GO:0051106 | positive regulation of DNA ligation | 0.0108123996402835 |
GO:0000912 | formation of actomyosin apparatus involved in cytokinesis | 0.0108123996402835 |
GO:0046600 | negative regulation of centriole replication | 0.0108123996402835 |
GO:0051908 | double-stranded DNA specific 5'-3' exodeoxyribonuclease activity | 0.0108123996402835 |
GO:0044238 | primary metabolic process | 0.0120065140422622 |
GO:0006275 | regulation of DNA replication | 0.0122243885150848 |
GO:0005871 | kinesin complex | 0.0122243885150848 |
GO:0016772 | transferase activity, transferring phosphorus-containing groups | 0.0123390518538693 |
GO:0007242 | intracellular signaling cascade | 0.0126011498066057 |
GO:0045934 | negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.0128454469568148 |
GO:0000794 | condensed nuclear chromosome | 0.0146655735302603 |
GO:0004520 | endodeoxyribonuclease activity | 0.0155381200506125 |
GO:0007127 | meiosis I | 0.0164297468384493 |
GO:0003690 | double-stranded DNA binding | 0.0169024261144819 |
GO:0000910 | cytokinesis | 0.0172611914159997 |
GO:0006284 | base-excision repair | 0.0181670168370224 |
GO:0045786 | negative regulation of progression through cell cycle | 0.0181670168370224 |
GO:0030951 | establishment and/or maintenance of microtubule cytoskeleton polarity | 0.0181670168370224 |
GO:0007099 | centriole replication | 0.0181670168370224 |
GO:0007095 | mitotic cell cycle G2/M transition DNA damage checkpoint | 0.0181670168370224 |
GO:0001940 | male pronucleus | 0.0181670168370224 |
GO:0035312 | 5'-3' exodeoxyribonuclease activity | 0.0181670168370224 |
GO:0048478 | replication fork protection | 0.0181670168370224 |
GO:0000920 | cell separation during cytokinesis | 0.0181670168370224 |
GO:0051300 | spindle pole body organization and biogenesis | 0.0181670168370224 |
GO:0043142 | single-stranded DNA-dependent ATPase activity | 0.0181670168370224 |
GO:0043138 | 3'-5' DNA helicase activity | 0.0181670168370224 |
GO:0042772 | DNA damage response, signal transduction resulting in transcription | 0.0181670168370224 |
GO:0048256 | flap endonuclease activity | 0.0181670168370224 |
GO:0046974 | histone lysine N-methyltransferase activity (H3-K9 specific) | 0.0181670168370224 |
GO:0008297 | single-stranded DNA specific exodeoxyribonuclease activity | 0.0181670168370224 |
GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator | 0.0181670168370224 |
GO:0007079 | mitotic chromosome movement towards spindle pole | 0.0181670168370224 |
GO:0042304 | regulation of fatty acid biosynthetic process | 0.0181670168370224 |
GO:0045132 | meiotic chromosome segregation | 0.0181670168370224 |
GO:0031436 | BRCA1-BARD1 complex | 0.0181670168370224 |
GO:0008309 | double-stranded DNA specific exodeoxyribonuclease activity | 0.0181670168370224 |
GO:0030952 | establishment and/or maintenance of cytoskeleton polarity | 0.0181670168370224 |
GO:0007100 | mitotic centrosome separation | 0.0181670168370224 |
GO:0000281 | cytokinesis after mitosis | 0.0181670168370224 |
GO:0051305 | chromosome movement towards spindle pole | 0.0181670168370224 |
GO:0042802 | identical protein binding | 0.0193571393351404 |
GO:0046983 | protein dimerization activity | 0.019716800523881 |
GO:0008284 | positive regulation of cell proliferation | 0.0200515202508408 |
GO:0045859 | regulation of protein kinase activity | 0.0211774524868829 |
GO:0030695 | GTPase regulator activity | 0.0224380973414996 |
GO:0043549 | regulation of kinase activity | 0.0225707756025468 |
GO:0031324 | negative regulation of cellular metabolic process | 0.022764649862004 |
GO:0004518 | nuclease activity | 0.0236853406264091 |
GO:0051338 | regulation of transferase activity | 0.0237332677434247 |
GO:0016301 | kinase activity | 0.0237332677434247 |
GO:0051293 | establishment of spindle localization | 0.0237332677434247 |
GO:0030263 | apoptotic chromosome condensation | 0.0237332677434247 |
GO:0046640 | regulation of alpha-beta T cell proliferation | 0.0237332677434247 |
GO:0051323 | metaphase | 0.0237332677434247 |
GO:0019237 | centromeric DNA binding | 0.0237332677434247 |
GO:0000150 | recombinase activity | 0.0237332677434247 |
GO:0051438 | regulation of ubiquitin-protein ligase activity | 0.0237332677434247 |
GO:0032506 | cytokinetic process | 0.0237332677434247 |
GO:0005816 | spindle pole body | 0.0237332677434247 |
GO:0010369 | chromocenter | 0.0237332677434247 |
GO:0001939 | female pronucleus | 0.0237332677434247 |
GO:0040001 | establishment of mitotic spindle localization | 0.0237332677434247 |
GO:0022616 | DNA strand elongation | 0.0237332677434247 |
GO:0006271 | DNA strand elongation during DNA replication | 0.0237332677434247 |
GO:0000019 | regulation of mitotic recombination | 0.0237332677434247 |
GO:0043515 | kinetochore binding | 0.0237332677434247 |
GO:0043014 | alpha-tubulin binding | 0.0237332677434247 |
GO:0007080 | mitotic metaphase plate congression | 0.0237332677434247 |
GO:0051653 | spindle localization | 0.0237332677434247 |
GO:0000089 | mitotic metaphase | 0.0237332677434247 |
GO:0051233 | spindle midzone | 0.0237332677434247 |
GO:0051299 | centrosome separation | 0.0237332677434247 |
GO:0046641 | positive regulation of alpha-beta T cell proliferation | 0.0237332677434247 |
GO:0006288 | base-excision repair, DNA ligation | 0.0237332677434247 |
GO:0046635 | positive regulation of alpha-beta T cell activation | 0.0237332677434247 |
GO:0046907 | intracellular transport | 0.0244474705892318 |
GO:0016363 | nuclear matrix | 0.0250646754310557 |
GO:0007276 | gamete generation | 0.0268282127913895 |
GO:0003684 | damaged DNA binding | 0.0268683644124776 |
GO:0003678 | DNA helicase activity | 0.0268683644124776 |
GO:0004536 | deoxyribonuclease activity | 0.027831735925585 |
GO:0048523 | negative regulation of cellular process | 0.029234859954128 |
GO:0045502 | dynein binding | 0.0293068289189407 |
GO:0045739 | positive regulation of DNA repair | 0.0293068289189407 |
GO:0031398 | positive regulation of protein ubiquitination | 0.0293068289189407 |
GO:0045091 | regulation of retroviral genome replication | 0.0293068289189407 |
GO:0008409 | 5'-3' exonuclease activity | 0.0293068289189407 |
GO:0000085 | G2 phase of mitotic cell cycle | 0.0293068289189407 |
GO:0046633 | alpha-beta T cell proliferation | 0.0293068289189407 |
GO:0051055 | negative regulation of lipid biosynthetic process | 0.0293068289189407 |
GO:0031576 | G2/M transition checkpoint | 0.0293068289189407 |
GO:0031572 | G2/M transition DNA damage checkpoint | 0.0293068289189407 |
GO:0046634 | regulation of alpha-beta T cell activation | 0.0293068289189407 |
GO:0051319 | G2 phase | 0.0293068289189407 |
GO:0008274 | gamma-tubulin ring complex | 0.0293068289189407 |
GO:0000931 | gamma-tubulin large complex | 0.0293068289189407 |
GO:0005828 | kinetochore microtubule | 0.0293068289189407 |
GO:0004386 | helicase activity | 0.0294580693352675 |
GO:0004519 | endonuclease activity | 0.0301321271431009 |
GO:0009892 | negative regulation of metabolic process | 0.0321214784596249 |
GO:0048519 | negative regulation of biological process | 0.0345334435713028 |
GO:0019992 | diacylglycerol binding | 0.0349641280249896 |
GO:0003893 | epsilon DNA polymerase activity | 0.0349641280249896 |
GO:0015030 | Cajal body | 0.0349641280249896 |
GO:0031573 | intra-S DNA damage checkpoint | 0.0349641280249896 |
GO:0051103 | DNA ligation during DNA repair | 0.0349641280249896 |
GO:0031401 | positive regulation of protein modification process | 0.0349641280249896 |
GO:0045120 | pronucleus | 0.0349641280249896 |
GO:0008089 | anterograde axon cargo transport | 0.0349641280249896 |
GO:0045070 | positive regulation of viral genome replication | 0.0349641280249896 |
GO:0019899 | enzyme binding | 0.0387242282387635 |
GO:0042493 | response to drug | 0.0388527672600919 |
GO:0006464 | protein modification process | 0.0404236550676691 |
GO:0000702 | oxidized base lesion DNA N-glycosylase activity | 0.0404236550676691 |
GO:0008534 | oxidized purine base lesion DNA N-glycosylase activity | 0.0404236550676691 |
GO:0045833 | negative regulation of lipid metabolic process | 0.0404236550676691 |
GO:0005521 | lamin binding | 0.0404236550676691 |
GO:0045090 | retroviral genome replication | 0.0404236550676691 |
GO:0051340 | regulation of ligase activity | 0.0404236550676691 |
GO:0006269 | DNA replication, synthesis of RNA primer | 0.0404236550676691 |
GO:0003896 | DNA primase activity | 0.0404236550676691 |
GO:0032991 | macromolecular complex | 0.0405047996155778 |
GO:0019953 | sexual reproduction | 0.0413333742262983 |
GO:0015631 | tubulin binding | 0.041913351511577 |
GO:0048468 | cell development | 0.0424276413523074 |
GO:0043623 | cellular protein complex assembly | 0.0440211717910729 |
GO:0000731 | DNA synthesis during DNA repair | 0.0456346615066092 |
GO:0006301 | postreplication repair | 0.0456346615066092 |
GO:0005814 | centriole | 0.0456346615066092 |
GO:0006359 | regulation of transcription from RNA polymerase III promoter | 0.0456346615066092 |
GO:0048524 | positive regulation of viral reproduction | 0.0456346615066092 |
GO:0065009 | regulation of a molecular function | 0.0462681939185262 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br>disease_data<br>
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.18e-13 | 253 |
animal cell | 7.43e-12 | 679 |
eukaryotic cell | 7.43e-12 | 679 |
neural cell | 1.00e-07 | 25 |
native cell | 1.05e-07 | 722 |
neurectodermal cell | 9.93e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.38e-59 | 235 |
disease of cellular proliferation | 1.76e-57 | 239 |
organ system cancer | 8.61e-30 | 137 |
cell type cancer | 1.42e-28 | 143 |
hematologic cancer | 3.48e-24 | 51 |
immune system cancer | 3.48e-24 | 51 |
carcinoma | 1.66e-22 | 106 |
leukemia | 1.75e-19 | 39 |
myeloid leukemia | 7.75e-15 | 31 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
ATF3#467 | 25 | 3.20902493228696 | 2.99036018049575e-07 | 1.50947427206764e-05 |
BCL3#602 | 13 | 2.5663562082777 | 0.00188248528005793 | 0.0110913280020292 |
BCLAF1#9774 | 42 | 5.19663542642924 | 8.8765288503037e-19 | 2.0739503279572e-16 |
BRCA1#672 | 69 | 7.95835379647108 | 2.08531332636188e-43 | 1.30411999096951e-40 |
CCNT2#905 | 103 | 3.72930721386944 | 2.08502963204116e-38 | 1.13415838406639e-35 |
CEBPB#1051 | 58 | 2.64186607027337 | 1.29244564773917e-12 | 1.79496982718393e-10 |
CHD2#1106 | 127 | 7.50680514247338 | 2.23159292065808e-88 | 3.06664911895538e-85 |
CTCF#10664 | 60 | 1.83780218505429 | 6.84688254025659e-07 | 3.09693185630948e-05 |
CTCFL#140690 | 30 | 3.38510989010989 | 4.97262058296064e-09 | 4.00412892107808e-07 |
E2F1#1869 | 162 | 4.542840301774 | 7.18484573172608e-95 | 1.087504497646e-91 |
E2F4#1874 | 173 | 12.5232824831098 | 8.58749244045613e-188 | 3.09265214823724e-184 |
E2F6#1876 | 146 | 4.18574135330182 | 7.93067246808312e-73 | 9.10188463619927e-70 |
EGR1#1958 | 109 | 3.10692297905317 | 4.98344976916624e-34 | 2.34444374072952e-31 |
ELF1#1997 | 152 | 3.69846222707855 | 1.401575159797e-70 | 1.50906297024782e-67 |
ELK4#2005 | 65 | 6.03039604457384 | 1.61182012092964e-33 | 7.44853458450311e-31 |
EP300#2033 | 39 | 1.50962129898688 | 0.00504822920127289 | 0.0235140491281661 |
ETS1#2113 | 112 | 6.2264069902095 | 5.55822721625236e-66 | 5.6358805071668e-63 |
FOS#2353 | 99 | 5.09027186046026 | 2.66269186441772e-48 | 1.85392583751948e-45 |
FOSL2#2355 | 21 | 2.0316240725474 | 0.00164723367542335 | 0.0103052256995052 |
FOXA1#3169 | 47 | 2.97615273269209 | 6.5599742044369e-12 | 8.41667255451087e-10 |
GABPB1#2553 | 107 | 4.32138383126567 | 1.48721583193014e-46 | 9.83059077664253e-44 |
GATA1#2623 | 60 | 4.64924850644586 | 8.6134245134183e-25 | 2.70143376203271e-22 |
GATA3#2625 | 18 | 2.80147025388405 | 8.86092084179814e-05 | 0.00129811433833154 |
GTF2B#2959 | 51 | 9.30934472371735 | 1.59091594665046e-34 | 7.656851177522e-32 |
GTF2F1#2962 | 81 | 5.89664303438497 | 2.33394101551043e-42 | 1.41717712627264e-39 |
HDAC2#3066 | 42 | 3.2197488567903 | 1.01353963542501e-11 | 1.26618499981044e-09 |
HEY1#23462 | 174 | 4.01702469428796 | 3.1669055009569e-104 | 5.60590582397352e-101 |
HMGN3#9324 | 92 | 4.29957937456145 | 4.96750252920554e-38 | 2.66051793152665e-35 |
HNF4A#3172 | 22 | 2.90805935991418 | 7.84466453758008e-06 | 0.000222270461106979 |
HNF4G#3174 | 16 | 2.62888434527514 | 0.00044341949353159 | 0.00412968507980611 |
IRF1#3659 | 145 | 6.32793568152438 | 5.35057396385227e-97 | 8.59705529555027e-94 |
IRF3#3661 | 59 | 15.8396296027308 | 3.15371845060316e-53 | 2.49523637320109e-50 |
IRF4#3662 | 20 | 2.5045157356279 | 0.000160425289468072 | 0.00199697935718189 |
JUN#3725 | 29 | 2.07355455187288 | 0.00014349990315681 | 0.00186753724433572 |
JUNB#3726 | 18 | 3.14852221643875 | 1.98785029278891e-05 | 0.000444749564542805 |
JUND#3727 | 71 | 2.83783508498767 | 1.82185029473507e-17 | 3.83613352685153e-15 |
MAFF#23764 | 11 | 3.53982240793941 | 0.000328020801771982 | 0.0033425860587632 |
MAX#4149 | 122 | 4.49835298342211 | 5.21955440039163e-58 | 4.74021775671741e-55 |
MXI1#4601 | 115 | 6.54617564175611 | 1.00771093762089e-70 | 1.09629502723113e-67 |
MYC#4609 | 101 | 3.014002680186 | 1.8584620883681e-29 | 7.29683917470211e-27 |
NANOG#79923 | 29 | 4.84627757685353 | 2.37708926970677e-12 | 3.22416657453124e-10 |
NFKB1#4790 | 119 | 3.73188312845181 | 3.61329131684236e-47 | 2.43463568928838e-44 |
NFYA#4800 | 112 | 11.7923716478915 | 9.53009508608791e-96 | 1.46369647161167e-92 |
NFYB#4801 | 113 | 10.8220379294264 | 1.00395280161665e-92 | 1.45627537011169e-89 |
NR2C2#7182 | 22 | 4.10012251380171 | 2.65575752648744e-08 | 1.8295821920107e-06 |
NR3C1#2908 | 28 | 2.39568373298769 | 1.56205385861904e-05 | 0.000365865312716559 |
NRF1#4899 | 80 | 5.58184203323927 | 5.01013411436673e-40 | 2.89090274458755e-37 |
PAX5#5079 | 83 | 3.16327965193006 | 3.41061327980397e-24 | 1.04765011861602e-21 |
PBX3#5090 | 26 | 3.25587045631627 | 1.275059606794e-07 | 7.29276836111493e-06 |
POLR2A#5430 | 175 | 2.14745317655807 | 7.45180401329323e-59 | 7.1399904527003e-56 |
POLR3A#11128 | 5 | 9.6894888597641 | 0.000187157979374115 | 0.00226364704202121 |
POU2F2#5452 | 89 | 4.63111452079477 | 5.24579633641302e-39 | 2.92976322769326e-36 |
RDBP#7936 | 7 | 6.145536159601 | 0.000166674082182185 | 0.00204310733204522 |
REST#5978 | 61 | 3.36372429533605 | 3.52846814894721e-18 | 7.87413856854483e-16 |
RFX5#5993 | 98 | 6.74683006322925 | 1.02937066149038e-58 | 9.68526509147688e-56 |
RXRA#6256 | 31 | 3.55607503607504 | 8.26773034892817e-10 | 7.7720386130667e-08 |
SETDB1#9869 | 41 | 9.44640613313388 | 8.16302694049053e-28 | 2.96020267582601e-25 |
SIN3A#25942 | 173 | 5.34706890136582 | 1.05891772484641e-123 | 2.30400642219239e-120 |
SIX5#147912 | 50 | 4.88191867298829 | 2.65798444302232e-21 | 7.15456797022701e-19 |
SMARCB1#6598 | 34 | 3.5462419231963 | 1.16953039463378e-10 | 1.25922252458925e-08 |
SMARCC1#6599 | 12 | 2.99405892477473 | 0.000776284295806765 | 0.00608529276962867 |
SP1#6667 | 148 | 4.81920253694202 | 2.50216627875889e-83 | 3.18687492667439e-80 |
SP2#6668 | 64 | 9.56471972346318 | 1.06359170007262e-44 | 6.81475175238556e-42 |
SPI1#6688 | 54 | 2.53161982548701 | 5.43673498928498e-11 | 6.09235156165165e-09 |
SREBF1#6720 | 25 | 6.71512134864119 | 8.55049267509536e-14 | 1.35099077835746e-11 |
SRF#6722 | 59 | 4.65162009981658 | 2.36652336745363e-24 | 7.31234715897897e-22 |
STAT1#6772 | 32 | 3.78634742805928 | 8.87395170813282e-11 | 9.68429093464664e-09 |
STAT2#6773 | 19 | 7.0857808716707 | 4.01443221402395e-11 | 4.58211241530543e-09 |
STAT3#6774 | 39 | 2.34433791365152 | 3.99638107446564e-07 | 1.93320075514644e-05 |
TAF1#6872 | 175 | 3.34304628574529 | 1.55290626467304e-92 | 2.22169832022175e-89 |
TAF7#6879 | 105 | 6.85984164295435 | 9.11257895869824e-65 | 9.0638917511189e-62 |
TAL1#6886 | 21 | 3.58423400129282 | 5.08385600166115e-07 | 2.37775565139941e-05 |
TBP#6908 | 175 | 3.70677068709639 | 2.13192217071704e-100 | 3.71093032645861e-97 |
TCF12#6938 | 38 | 2.30919809304619 | 8.47043702266688e-07 | 3.68141478239828e-05 |
TCF7L2#6934 | 56 | 3.44645650020395 | 4.94469186355296e-17 | 1.01258563438747e-14 |
TFAP2A#7020 | 38 | 3.58690346386119 | 5.35713562656047e-12 | 6.96754530139912e-10 |
TFAP2C#7022 | 58 | 3.58248719641082 | 1.82590427657175e-18 | 4.13656435446589e-16 |
THAP1#55145 | 30 | 5.37756764620308 | 6.86188160132018e-14 | 1.09411916421417e-11 |
TRIM28#10155 | 41 | 4.35549443917579 | 1.07666014070838e-15 | 2.02239763373097e-13 |
USF1#7391 | 88 | 3.19892535082457 | 2.18067284018526e-26 | 7.3943925570165e-24 |
USF2#7392 | 37 | 2.74692173284329 | 1.62547353457485e-08 | 1.1821924127957e-06 |
WRNIP1#56897 | 8 | 5.02034122740005 | 0.000226010408440665 | 0.00249490551179946 |
YY1#7528 | 146 | 4.09731959702093 | 1.5434855608852e-71 | 1.71489455843924e-68 |
ZBTB33#10009 | 44 | 7.96141657896669 | 6.83557709403704e-27 | 2.35610837004665e-24 |
ZBTB7A#51341 | 69 | 2.89875281281964 | 2.20434489150265e-17 | 4.60439152247289e-15 |
ZEB1#6935 | 38 | 3.66720238095238 | 2.77963020458267e-12 | 3.71705248318066e-10 |
ZNF143#7702 | 64 | 4.93746342481478 | 4.65397501926886e-28 | 1.69357664472969e-25 |
ZNF263#10127 | 59 | 2.77193518047789 | 9.55797559135582e-14 | 1.50109084629415e-11 |
ZZZ3#26009 | 4 | 5.47230199851962 | 0.00649622629937089 | 0.0278239574507872 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data