Personal tools

User:Hisa/SemanticResults: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
== TSS expression ==
{{#ask:[[:FFCP PHASE1:+]][[species::Human (Homo sapiens)]][[EntrezGene::-]]|format=count}}
<html>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/flot/jquery.flot.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/jquery.blockUI.js"></script>
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>


</html>


<html>
<html>
<style type="text/css"> 
<img src="/resource_browser/seqlogos/known_motifs_201304/known1.png">
.rotate90 {
  -webkit-transform: rotate(-90deg);
  -moz-transform: rotate(-90deg);
-webkit-transform-origin: 6px 18px;
-moz-transform-origin: 6px 18px;
width:1px;
}
.highlight { background-color: yellow }
</style>
<script type="text/javascript">
$(document).ready(function() {
 
    var oTable =  $('#gene_exptable').dataTable({
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaSorting": [[1,'desc']],
"aoColumnDefs": [{ "asSorting": [ "asc", "desc" ], "sType": "html", "aTargets": [ 0 ] }, { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] } ]
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
 
 
var data = [];
var plotdata = [];
 
 
// chart checkbox
for (var i2=1; i2<oTable.fnSettings().aoColumns.length; i2++){
key2 = i2-1;
        $("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 +
                              '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">'
                                + $(oTable.fnSettings().aoColumns[i2].sTitle).text() + '</label><br/>');
}
 
function collectdata(){
data = [];
for (i2=1, len2=oTable.fnSettings().aoColumns.length; i2<len2; i2++){
var plots = [];
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) {
    plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]);
}
data.push({"label": $(oTable.fnSettings().aoColumns[i2].sTitle).text(), "data": plots});
}
}
 
 
function drawchart(){
plotdata = [];
 
$("#gene_exptable_chart_chkbox").find("input:checked").each(function () {
var key = $(this).attr("name");
plotdata.push(data[$(this).attr("name")]);
});
 
var plot1 = $.plot($("#gene_exptable_chart"), plotdata, {
                yaxis : { axisLabel : 'TPM' },
lines : { show : false },
points : { show : true },
                grid: { hoverable: true, clickable: true },
xaxis : { tickDecimals : 0, show: false },
                legend: { show: false }
});
 
//test
var data_series = plot1.getData();
 
$("#gene_exptable_chart_chkbox label").css("background-color", "white");
$.each(data_series , function(){
$("#gene_exptable_chart_chkbox label:contains(" + this.label + ")").css("background-color", this.color);
});
 
}
 
collectdata();
drawchart();
 
// re-draw chart event
$(window).resize(function() { drawchart(); });
$("th").click(function() {$.blockUI(); collectdata(); drawchart(); $.unblockUI();} );
$("#gene_exptable_paginate").click(function() {collectdata(); drawchart(); } );
$('#gene_exptable').bind('filter', function() {
setTimeout(function(){
collectdata(); drawchart();}, 1000);
} );
$('#gene_exptable_length').change(function() {collectdata(); drawchart(); } );
$("#gene_exptable_chart_chkbox").find("input").click(function() { drawchart(); });
 
// tooltip function start
    function showTooltip(x, y, contents) {
        $('<div id="tooltip">' + contents + '</div>').css( {
            position: 'absolute',
            display: 'none',
            top: y + 5,
            left: x + 5,
            border: '1px solid #aaa',
            padding: '2px',
            'background-color': '#fff',
            opacity: 0.80
        }).appendTo("body").fadeIn(200);
    }
 
    var previousPoint = null;
    $("#gene_exptable_chart").bind("plothover", function (event, pos, item) {
        $("#x").text(pos.x.toFixed(2));
        $("#y").text(pos.y.toFixed(2));
            if (item) {
                if (previousPoint != item.dataIndex) {
                    previousPoint = item.dataIndex;
                   
                    $("#tooltip").remove();
                    x = item.datapoint[0].toFixed(0),
                    y = item.datapoint[1].toFixed(2);
                 
                    showTooltip(item.pageX, item.pageY,
                              "TSS: "+ item.series.label +"<br>TPM: "+y);
                }
            }
            else {
                $("#tooltip").remove();
                previousPoint = null;           
            }
    });
// tooltip function end
 
// clicking point function
    $("#gene_exptable_chart").bind("plotclick", function (event, pos, item) {
if (item){
var vdata = Math.round($('#gene_exptable').height())/item.series.data.length*item.dataIndex;
$('#gene_exptable_wrapper .dataTables_scrollBody').animate({ scrollTop: vdata-150 }, 'slow');
$("#gene_exptable_wrapper .dataTables_scrollBody tbody td").removeClass('highlight');
$('#gene_exptable_wrapper .dataTables_scrollBody tbody tr:eq(' + item.dataIndex+ ') td').addClass('highlight');
}
    });
// clicking point function end
 
 
 
 
 
} );
</script>
</html>
</html>


{{#gene_exptable:{{#switch:9606|9606=Hg19|10090=Mm9}}
https://f5-webapp3.gsc.riken.jp/resource_browser/seqlogos/known_motifs_201304/known1.png
|{{#ask:[[Category:FFCP]][[Short description::p1@B4GALT1]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p1@B4GALT1,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p2@B4GALT1]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p2@B4GALT1,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p3@B4GALT1]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p3@B4GALT1,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p4@B4GALT1]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p4@B4GALT1,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p5@B4GALT1]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p5@B4GALT1},|searchlabel=}}
}}
 
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div>
<br>
<div id="gene_exptable_chart_chkbox" style="float:left;"></div>
<div style="clear:both;"></div>
 


*Click each plot point to find sample in table
http://fantom.gsc.riken.jp/5/sstar/seqlogo/novel/11.png

Latest revision as of 11:00, 18 April 2013

0


known1.png

11.png