NonredundantMotifs:15: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=3662
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq ...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id=3662 | |entrez_gene_id=3662 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0050.1;IRF1~MA0051.1;IRF2 /HOCOMOCO:IRF2_f1~IRF4_si~PRDM1_f1~STAT2_f1~IRF7_f1~IRF3_f1~IRF1_si~IRF9_f1~IRF8_si /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq /UNIPROBE:Irf5_primary;SCI09~Irf6_primary;SCI09~Irf4_primary;SCI09~Irf3_primary;SCI09~Isgf3g_primary;SCI09 | ||
|name=known15 | |name=known15 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known15
- db :HOCOMOCO
- Id :IRF4_si
- name :
- score :1.488155978935132
- External refs:
- Internal refs:
| Motif matrix | |
|---|---|
|
Sub Motif Members
