NonredundantMotifs:27: Difference between revisions
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|entrez_gene_id=5970
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NFKB1_REL_RELA.p2 /HOMER:RELA_GM12787-p65-ChIP-Seq~NFKB1_p50-ChIP-Chip /JASPAR:M...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=5970 | |entrez_gene_id=5970 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0105.1;NFKB1~MA0101.1;REL~MA0061.1;NF-kappaB~MA0107.1;RELA /HOCOMOCO:REL_do~NFKB1_f1~NFKB2_f1~RELB_si~ZEP1_f1~TF65_f2 /SWISSREGULON:NFKB1_REL_RELA.p2 /HOMER:RELA_GM12787-p65-ChIP-Seq~NFKB1_p50-ChIP-Chip | ||
|name=known27 | |name=known27 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known27
- db :HOMER
- Id :RELA_GM12787-p65-ChIP-Seq
- name :
- score :0.6841308706017131
- External refs:
- Internal refs:
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Sub Motif Members
