NonredundantMotifs:41: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=861
|motif_cluster_2013_march_motif_members= /SWISSREGULON:RUNX1..3.p2 /HOMER:RUNX1_Jurkat-RUNX1-ChIP-Seq~RUNX1_HPC7-Runx1-ChIP-Seq~RUNX2_PCa...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id=861 | |entrez_gene_id=861 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:RUNX1..3.p2 /HOMER:RUNX1_Jurkat-RUNX1-ChIP-Seq~RUNX1_HPC7-Runx1-ChIP-Seq~RUNX2_PCa-RUNX2-ChIP-Seq(GSE33889) | |motif_cluster_2013_march_motif_members= /JASPAR:MA0002.2;RUNX1 /HOCOMOCO:RUNX1_f1~RUNX3_si~PEBB_f1~RUNX2_f1 /SWISSREGULON:RUNX1..3.p2 /HOMER:RUNX1_Jurkat-RUNX1-ChIP-Seq~RUNX1_HPC7-Runx1-ChIP-Seq~RUNX2_PCa-RUNX2-ChIP-Seq(GSE33889) | ||
|name=known41 | |name=known41 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known41
- db :HOMER
- Id :RUNX1_Jurkat-RUNX1-ChIP-Seq
- name :
- score :0.526554319571298
- External refs:
- Internal refs:
| Motif matrix | |
|---|---|
|
Sub Motif Members
