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NonredundantMotifs:58: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.2072368421052633;2.220394736842101;5.536184210526312;1.036184210526312!2;3.0789473684210553;5.921052631578945;0.0;0.0!3;0.947368421052633;0.0;8.052631578947368;0.0!4;1.065789473684211;0.0;3.197368421052633;4.736842105263156!5;0.0;0.0;9.0;0.0!6;0.0;1.776315789473688;7.223684210526312;0.0!7;1.894736842105266;0.0;6.157894736842102;0.947368421052633!8;6.868421052631579;1.065789473684211;1.065789473684211;0.0!9;1.776315789473688;3.3157894736842106;3.907894736842101;0.0!10;5.092105263157898;0.0;3.907894736842101;0.0
|entrez_gene_id=190
|entrez_gene_id=190
|motif_cluster_2013_march_motif_members= /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /HOCOMOCO:NR0B1_si~MZF1_f1 /SWISSREGULON:MZF1.p2 /UNIPROBE:Egr1_secondary;SCI09
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MZF1.p2 /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /UNIPROBE:Egr1_secondary;SCI09 /HOCOMOCO:NR0B1_si~MZF1_f1
|name=known58
|name=known58
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 10:46, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known58
  • db :HOCOMOCO
  • Id :NR0B1_si
  • name  :
  • score :3.268553894711853
  • External refs:
EntrezGene:190
UniProt:190

  • Internal refs:
EntrezGene:190


Motif matrix
P0ACGT
10.20723684210526332.2203947368421015.5361842105263121.036184210526312
23.07894736842105535.9210526315789450.00.0
30.9473684210526330.08.0526315789473680.0
41.0657894736842110.03.1973684210526334.736842105263156
50.00.09.00.0
60.01.7763157894736887.2236842105263120.0
71.8947368421052660.06.1578947368421020.947368421052633
86.8684210526315791.0657894736842111.0657894736842110.0
91.7763157894736883.31578947368421063.9078947368421010.0
105.0921052631578980.03.9078947368421010.0

Sub Motif Members