NonredundantMotifs:74: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;609.7069814681898;577.9041039501179;878.3336339500557;276.05528063164616!2;405.720515019466;707.1756109544475;964.951896082597;264.15197794349774!3;494.2054767763018;386.73299366991745;1331.9324531828045;129.12907637097777!4;350.40388209193935;113.69050159456144;143.53167137109685;1734.373944942392!5;50.244132749905994;77.73771344619745;2128.8593525123006;85.15880129157833!6;121.65571572725959;13.366044602383216;2201.522711261202;5.455528409136009!7;411.3371414844022;516.6249880860175;1149.0691324336724;264.9687379959127!8;260.005063075756;537.9001223280518;1514.6903724031047;29.40444219308533!9;677.9442498673723;351.2166477942834;25.80464937521329;1287.034452963133!10;58.59237511412069;183.5204092993443;2042.5508959047345;57.33631968178278!11;1637.5427379963799;46.970815704424396;526.1740173216805;131.3124289775092!12;368.5120994048417;440.0312237414232;865.3365151282493;668.1201617254982!13;371.10525859117723;490.79313239643824;1055.590008369046;424.5116006433473 | |||
|entrez_gene_id=6721 | |entrez_gene_id=6721 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /HOMER:SREBP2_HepG2-Srebp2-ChIP-Seq~SREBP1A_HepG2-Srebp1a-ChIP-Seq /HOCOMOCO:SRBP1_f2~SRBP2_f1 | ||
|name=known74 | |name=known74 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known74
- db :HOCOMOCO
- Id :SRBP2_f1
- name :
- score :2.2010523190333684
- External refs:
- Internal refs:
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Sub Motif Members
