NonredundantMotifs:165: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=22809
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ATF5_si
|name=known165
|representative_motif_db=HOCOMOCO
|representative_motif_id=...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;8.03360655737706;1.9745901639344263;3.164754098360656;19.827049180327883!2;29.213114754098353;0.865573770491803;0.9737704918032796;1.9475409836065556!3;30.18688524590165;0.0;0.0;2.8131147540983616!4;0.0;0.0;31.052459016393442;1.9475409836065556!5;0.9737704918032796;0.0;32.02622950819671;0.0!6;16.662295081967205;0.865573770491803;12.659016393442618;2.8131147540983616!7;28.131147540983587;0.9737704918032796;0.9737704918032796;2.921311475409835!8;0.865573770491803;0.865573770491803;31.268852459016383;0.0!9;33.0;0.0;0.0;0.0!10;14.390163934426235;3.8950819672131183;13.740983606557384;0.9737704918032796!11;6.70819672131147;0.9737704918032796;20.449180327868856;4.868852459016382!12;5.382786885245912;4.4090163934426165;14.146721311475412;9.061475409836058 | |||
|entrez_gene_id=22809 | |entrez_gene_id=22809 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ATF5_si | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ATF5_si | ||
Revision as of 10:48, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known165
- db :HOCOMOCO
- Id :ATF5_si
- name :
- score :0.0902609800519367
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
