NonredundantMotifs:202

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known202
• db :UNIPROBE
• Id :Sp100_secondary
• name :SCI09
• score :0.18425104890212407
  
• External refs:

EntrezGene:6672
UniProt:6672

• Internal refs:

EntrezGene:6672

Motif matrix

P0 A C G T 1 0.121526868834704 0.301306595803046 0.180154745514129 0.397011789848121 2 0.13949804072987 0.362712585798648 0.312252387062824 0.185536986408657 3 0.117582640679479 0.681448456883569 0.0669537709673337 0.134015131469618 4 0.0476687564663744 0.0300857133020482 0.903231101122884 0.0190144291086931 5 0.170226465642055 0.102195984086672 0.0727563673152728 0.654821182956 6 0.0286977874478734 0.940593313668115 0.0176754474553554 0.0130334514286561 7 0.0296433147305687 0.0303153600156743 0.911277078513077 0.0287642467406804 8 0.217031886547908 0.360572574510661 0.201883320347318 0.220512218594114 9 0.122290621138044 0.216246103471431 0.274158710211832 0.387304565178694 10 0.163480174612115 0.120996006160444 0.185701247073994 0.529822572153446 11 0.662318900855654 0.0641127728185081 0.0385112069981063 0.235057119327732 12 0.608197075335839 0.108227437336873 0.106516031366772 0.177059455960516 13 0.420638990560045 0.144577459849267 0.0854775832980062 0.349305966292682 14 0.33202590406268 0.206552232163012 0.217711323274191 0.243710540500117 15 0.155857421369403 0.264945781029885 0.317959955145965 0.261236842454747