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NonredundantMotifs:15: Difference between revisions

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|PWM=P0;A;C;G;T!1;812.0220965888938;337.92796193918946;419.51567969119344;213.10847329094975!2;1114.8485059362908;127.1410871122624;245.98066853689852;294.6039499247774!3;1127.7730815375821;103.1977571431449;319.6308311419565;231.97254168754546!4;1040.9761464165722;37.412577781325524;394.9808272207566;309.2046600915737!5;782.838815349718;200.3199728442578;666.9077608161709;132.50766250008104!6;1147.4644365133604;101.81288838674526;346.4188937536387;186.87799285648484!7;411.6340844182101;1.9781074042370632;1354.977692883163;13.984326804618343!8;906.3833167234949;2.3824932496579687;873.1904527395809;0.6179487974938186!9;1777.9730787976325;4.601132712599544;0.0;0.0!10;1778.466076288496;0.614425913308934;1.9692129151126248;1.5244963933138587!11;664.850272291718;612.2483335386709;504.8991301157549;0.5764755640830157!12;443.5764332446058;169.47194472656992;168.35041217087658;1001.1754213681763!13;304.8612633573023;86.76232167235445;1361.9646289810144;28.98599749955608!14;1586.9772640973506;43.972703871132055;123.33142904653405;28.292814495212987!15;1258.458106087965;34.891255917742114;487.5493768943859;1.6754726101381874!16;1577.5357267059856;90.21685079585978;113.58258644713297;1.2390475612520513
|PWM=P0;A;C;G;T!1;812.0220965888938;337.92796193918946;419.51567969119344;213.10847329094975!2;1114.8485059362908;127.1410871122624;245.98066853689852;294.6039499247774!3;1127.7730815375821;103.1977571431449;319.6308311419565;231.97254168754546!4;1040.9761464165722;37.412577781325524;394.9808272207566;309.2046600915737!5;782.838815349718;200.3199728442578;666.9077608161709;132.50766250008104!6;1147.4644365133604;101.81288838674526;346.4188937536387;186.87799285648484!7;411.6340844182101;1.9781074042370632;1354.977692883163;13.984326804618343!8;906.3833167234949;2.3824932496579687;873.1904527395809;0.6179487974938186!9;1777.9730787976325;4.601132712599544;0.0;0.0!10;1778.466076288496;0.614425913308934;1.9692129151126248;1.5244963933138587!11;664.850272291718;612.2483335386709;504.8991301157549;0.5764755640830157!12;443.5764332446058;169.47194472656992;168.35041217087658;1001.1754213681763!13;304.8612633573023;86.76232167235445;1361.9646289810144;28.98599749955608!14;1586.9772640973506;43.972703871132055;123.33142904653405;28.292814495212987!15;1258.458106087965;34.891255917742114;487.5493768943859;1.6754726101381874!16;1577.5357267059856;90.21685079585978;113.58258644713297;1.2390475612520513
|entrez_gene_id=3662
|entrez_gene_id=3662
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /JASPAR:MA0050.1;IRF1~MA0051.1;IRF2 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq /UNIPROBE:Irf5_primary;SCI09~Irf6_primary;SCI09~Irf4_primary;SCI09~Irf3_primary;SCI09~Isgf3g_primary;SCI09 /HOCOMOCO:IRF2_f1~IRF4_si~PRDM1_f1~STAT2_f1~IRF7_f1~IRF3_f1~IRF1_si~IRF9_f1~IRF8_si
|motif_cluster_2013_march_motif_members= /JASPAR:MA0050.1;IRF1~MA0051.1;IRF2 /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq /UNIPROBE:Irf5_primary;SCI09~Irf6_primary;SCI09~Irf4_primary;SCI09~Irf3_primary;SCI09~Isgf3g_primary;SCI09 /HOCOMOCO:IRF2_f1~IRF4_si~PRDM1_f1~STAT2_f1~IRF7_f1~IRF3_f1~IRF1_si~IRF9_f1~IRF8_si
|name=known15
|name=known15
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known15
  • db :HOCOMOCO
  • Id :IRF4_si
  • name  :
  • score :1.488155978935132
  • External refs:
EntrezGene:3662
UniProt:3662

  • Internal refs:
EntrezGene:3662


Motif matrix
P0ACGT
1812.0220965888938337.92796193918946419.51567969119344213.10847329094975
21114.8485059362908127.1410871122624245.98066853689852294.6039499247774
31127.7730815375821103.1977571431449319.6308311419565231.97254168754546
41040.976146416572237.412577781325524394.9808272207566309.2046600915737
5782.838815349718200.3199728442578666.9077608161709132.50766250008104
61147.4644365133604101.81288838674526346.4188937536387186.87799285648484
7411.63408441821011.97810740423706321354.97769288316313.984326804618343
8906.38331672349492.3824932496579687873.19045273958090.6179487974938186
91777.97307879763254.6011327125995440.00.0
101778.4660762884960.6144259133089341.96921291511262481.5244963933138587
11664.850272291718612.2483335386709504.89913011575490.5764755640830157
12443.5764332446058169.47194472656992168.350412170876581001.1754213681763
13304.861263357302386.762321672354451361.964628981014428.98599749955608
141586.977264097350643.972703871132055123.3314290465340528.292814495212987
151258.45810608796534.891255917742114487.54937689438591.6754726101381874
161577.535726705985690.21685079585978113.582586447132971.2390475612520513

Sub Motif Members

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