Personal tools

NonredundantMotifs:20: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;0.166568766856209;0.264627108388554;0.345569142484832;0.223234982270405!2;0.33559928597741;0.314450610927775;0.153335527947911;0.196614575146903!3;0.105350177962422;0.231838574306408;0.348017956536648;0.314793291194522!4;0.131273546627942;0.215623354635515;0.291288121053264;0.361814977683279!5;0.125569694828312;0.0723405433039333;0.404847922626842;0.397241839240913!6;0.0498787196364293;0.0391102710274104;0.325166661310853;0.585844348025307!7;0.705097892800264;0.009201616401007;0.284757379772287;0.000943111026442243!8;0.00353499698110437;0.986983062531775;0.0042753772905585;0.00520656319656203!9;0.00520656319656203;0.0042753772905585;0.986983062531775;0.00353499698110437!10;0.000943111026442243;0.284757379772287;0.009201616401007;0.705097892800264!11;0.585844348025307;0.325166661310853;0.0391102710274104;0.0498787196364293!12;0.397241839240913;0.404847922626842;0.0723405433039333;0.125569694828312!13;0.20685699747934;0.234554986714772;0.371730556802614;0.186857459003274!14;0.435956762345371;0.145114819741633;0.181032594493967;0.237895823419029!15;0.176103786632641;0.260126809366949;0.230769700644802;0.332999703355608!16;0.272101580475796;0.213365385159242;0.312031811553531;0.202501222811432!17;0.237402122772389;0.250981758957196;0.266976765334794;0.244639352935621
|PWM=P0;A;C;G;T!1;0.166568766856209;0.264627108388554;0.345569142484832;0.223234982270405!2;0.33559928597741;0.314450610927775;0.153335527947911;0.196614575146903!3;0.105350177962422;0.231838574306408;0.348017956536648;0.314793291194522!4;0.131273546627942;0.215623354635515;0.291288121053264;0.361814977683279!5;0.125569694828312;0.0723405433039333;0.404847922626842;0.397241839240913!6;0.0498787196364293;0.0391102710274104;0.325166661310853;0.585844348025307!7;0.705097892800264;0.009201616401007;0.284757379772287;0.000943111026442243!8;0.00353499698110437;0.986983062531775;0.0042753772905585;0.00520656319656203!9;0.00520656319656203;0.0042753772905585;0.986983062531775;0.00353499698110437!10;0.000943111026442243;0.284757379772287;0.009201616401007;0.705097892800264!11;0.585844348025307;0.325166661310853;0.0391102710274104;0.0498787196364293!12;0.397241839240913;0.404847922626842;0.0723405433039333;0.125569694828312!13;0.20685699747934;0.234554986714772;0.371730556802614;0.186857459003274!14;0.435956762345371;0.145114819741633;0.181032594493967;0.237895823419029!15;0.176103786632641;0.260126809366949;0.230769700644802;0.332999703355608!16;0.272101580475796;0.213365385159242;0.312031811553531;0.202501222811432!17;0.237402122772389;0.250981758957196;0.266976765334794;0.244639352935621
|entrez_gene_id=10691
|entrez_gene_id=10691
|motif_cluster_2013_march_motif_members= /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /JASPAR:MA0018.2;CREB1 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /UNIPROBE:Jundm2_primary;SCI09~Gmeb1_primary;SCI09~Atf1_primary;SCI09 /HOCOMOCO:ATF3_f1~E4F1_f1~ATF2+ATF4_f1~ATF1_si~CREM_f1~CREB1_f1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0018.2;CREB1 /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /UNIPROBE:Jundm2_primary;SCI09~Gmeb1_primary;SCI09~Atf1_primary;SCI09 /HOCOMOCO:ATF3_f1~E4F1_f1~ATF2+ATF4_f1~ATF1_si~CREM_f1~CREB1_f1
|name=known20
|name=known20
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known20
  • db :UNIPROBE
  • Id :Gmeb1_primary
  • name :SCI09
  • score :0.6275573267230993
  • External refs:
EntrezGene:10691
UniProt:10691

  • Internal refs:
EntrezGene:10691


Motif matrix
P0ACGT
10.1665687668562090.2646271083885540.3455691424848320.223234982270405
20.335599285977410.3144506109277750.1533355279479110.196614575146903
30.1053501779624220.2318385743064080.3480179565366480.314793291194522
40.1312735466279420.2156233546355150.2912881210532640.361814977683279
50.1255696948283120.07234054330393330.4048479226268420.397241839240913
60.04987871963642930.03911027102741040.3251666613108530.585844348025307
70.7050978928002640.0092016164010070.2847573797722870.000943111026442243
80.003534996981104370.9869830625317750.00427537729055850.00520656319656203
90.005206563196562030.00427537729055850.9869830625317750.00353499698110437
100.0009431110264422430.2847573797722870.0092016164010070.705097892800264
110.5858443480253070.3251666613108530.03911027102741040.0498787196364293
120.3972418392409130.4048479226268420.07234054330393330.125569694828312
130.206856997479340.2345549867147720.3717305568026140.186857459003274
140.4359567623453710.1451148197416330.1810325944939670.237895823419029
150.1761037866326410.2601268093669490.2307697006448020.332999703355608
160.2721015804757960.2133653851592420.3120318115535310.202501222811432
170.2374021227723890.2509817589571960.2669767653347940.244639352935621

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:20&oldid=2578419"