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NonredundantMotifs:21: Difference between revisions

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|PWM=P0;A;C;G;T!1;7.178680981595098;5.022239263803676;12.626533742331297;6.157208588957061!2;12.711656441717777;3.6319018404907886;9.647239263803666;4.993865030674838!3;6.809815950920249;0.9079754601226988;17.251533742331286;6.015337423312876!4;1.8159509202453976;0.9079754601226988;15.32208588957056;12.938650306748471!5;5.901840490797528;3.8588957055214848;18.27300613496932;2.9509202453987706!6;6.923312883435566;3.0644171779141085;20.996932515337424;0.0!7;0.0;0.0;30.9846625766871;0.0!8;0.0;4.085889570552149;26.898773006134952;0.0!9;2.8374233128834345;19.18098159509201;8.966257668711641;0.0!10;2.042944785276071;2.042944785276071;26.898773006134952;0.0!11;0.0;3.8588957055214848;22.358895705521444;4.766871165644174!12;13.733128834355814;0.0;15.32208588957056;1.9294478527607362!13;11.236196319018411;5.107361963190186;14.641104294478534;0.0!14;4.880368098159522;13.619631901840497;6.355828220858888;6.128834355828223!15;2.9509202453987706;6.355828220858888;6.4693251533742355;15.20858895705521!16;19.861963190184035;1.8159509202453976;7.263803680981577;2.042944785276071!17;16.343558282208566;4.766871165644174;5.788343558282212;4.085889570552149
|PWM=P0;A;C;G;T!1;7.178680981595098;5.022239263803676;12.626533742331297;6.157208588957061!2;12.711656441717777;3.6319018404907886;9.647239263803666;4.993865030674838!3;6.809815950920249;0.9079754601226988;17.251533742331286;6.015337423312876!4;1.8159509202453976;0.9079754601226988;15.32208588957056;12.938650306748471!5;5.901840490797528;3.8588957055214848;18.27300613496932;2.9509202453987706!6;6.923312883435566;3.0644171779141085;20.996932515337424;0.0!7;0.0;0.0;30.9846625766871;0.0!8;0.0;4.085889570552149;26.898773006134952;0.0!9;2.8374233128834345;19.18098159509201;8.966257668711641;0.0!10;2.042944785276071;2.042944785276071;26.898773006134952;0.0!11;0.0;3.8588957055214848;22.358895705521444;4.766871165644174!12;13.733128834355814;0.0;15.32208588957056;1.9294478527607362!13;11.236196319018411;5.107361963190186;14.641104294478534;0.0!14;4.880368098159522;13.619631901840497;6.355828220858888;6.128834355828223!15;2.9509202453987706;6.355828220858888;6.4693251533742355;15.20858895705521!16;19.861963190184035;1.8159509202453976;7.263803680981577;2.042944785276071!17;16.343558282208566;4.766871165644174;5.788343558282212;4.085889570552149
|entrez_gene_id=6668
|entrez_gene_id=6668
|motif_cluster_2013_march_motif_members= /SWISSREGULON:E2F1..5.p2~TFDP1.p2 /JASPAR:MA0024.1;E2F1 /HOMER:E2F7_Hela-E2F7-ChIP-Seq(GSE32673)~E2F1_Hela-E2F1-ChIP-Seq /UNIPROBE:Smad3_secondary;SCI09 /HOCOMOCO:E2F6_f1~E2F4_do~E2F2_f1~E2F7_f1~E2F1_f2~TFDP1_f1~E2F3_si~E2F5_do~SP2_si
|motif_cluster_2013_march_motif_members= /JASPAR:MA0024.1;E2F1 /SWISSREGULON:E2F1..5.p2~TFDP1.p2 /HOMER:E2F7_Hela-E2F7-ChIP-Seq(GSE32673)~E2F1_Hela-E2F1-ChIP-Seq /UNIPROBE:Smad3_secondary;SCI09 /HOCOMOCO:E2F6_f1~E2F4_do~E2F2_f1~E2F7_f1~E2F1_f2~TFDP1_f1~E2F3_si~E2F5_do~SP2_si
|name=known21
|name=known21
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known21
  • db :HOCOMOCO
  • Id :SP2_si
  • name  :
  • score :4.312902901611167
  • External refs:
EntrezGene:6668
UniProt:6668

  • Internal refs:
EntrezGene:6668


Motif matrix
P0ACGT
17.1786809815950985.02223926380367612.6265337423312976.157208588957061
212.7116564417177773.63190184049078869.6472392638036664.993865030674838
36.8098159509202490.907975460122698817.2515337423312866.015337423312876
41.81595092024539760.907975460122698815.3220858895705612.938650306748471
55.9018404907975283.858895705521484818.273006134969322.9509202453987706
66.9233128834355663.064417177914108520.9969325153374240.0
70.00.030.98466257668710.0
80.04.08588957055214926.8987730061349520.0
92.837423312883434519.180981595092018.9662576687116410.0
102.0429447852760712.04294478527607126.8987730061349520.0
110.03.858895705521484822.3588957055214444.766871165644174
1213.7331288343558140.015.322085889570561.9294478527607362
1311.2361963190184115.10736196319018614.6411042944785340.0
144.88036809815952213.6196319018404976.3558282208588886.128834355828223
152.95092024539877066.3558282208588886.469325153374235515.20858895705521
1619.8619631901840351.81595092024539767.2638036809815772.042944785276071
1716.3435582822085664.7668711656441745.7883435582822124.085889570552149

Sub Motif Members

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