NonredundantMotifs:58: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;0.2072368421052633;2.220394736842101;5.536184210526312;1.036184210526312!2;3.0789473684210553;5.921052631578945;0.0;0.0!3;0.947368421052633;0.0;8.052631578947368;0.0!4;1.065789473684211;0.0;3.197368421052633;4.736842105263156!5;0.0;0.0;9.0;0.0!6;0.0;1.776315789473688;7.223684210526312;0.0!7;1.894736842105266;0.0;6.157894736842102;0.947368421052633!8;6.868421052631579;1.065789473684211;1.065789473684211;0.0!9;1.776315789473688;3.3157894736842106;3.907894736842101;0.0!10;5.092105263157898;0.0;3.907894736842101;0.0 | |PWM=P0;A;C;G;T!1;0.2072368421052633;2.220394736842101;5.536184210526312;1.036184210526312!2;3.0789473684210553;5.921052631578945;0.0;0.0!3;0.947368421052633;0.0;8.052631578947368;0.0!4;1.065789473684211;0.0;3.197368421052633;4.736842105263156!5;0.0;0.0;9.0;0.0!6;0.0;1.776315789473688;7.223684210526312;0.0!7;1.894736842105266;0.0;6.157894736842102;0.947368421052633!8;6.868421052631579;1.065789473684211;1.065789473684211;0.0!9;1.776315789473688;3.3157894736842106;3.907894736842101;0.0!10;5.092105263157898;0.0;3.907894736842101;0.0 | ||
|entrez_gene_id=190 | |entrez_gene_id=190 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /SWISSREGULON:MZF1.p2 /UNIPROBE:Egr1_secondary;SCI09 /HOCOMOCO:NR0B1_si~MZF1_f1 | ||
|name=known58 | |name=known58 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known58
- db :HOCOMOCO
- Id :NR0B1_si
- name :
- score :3.268553894711853
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
