NonredundantMotifs:104: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;35.413303;14.42905;14.719405;26.089752!2;84.290751;3.708783;2.651976;0!3;8.178523;49.655634;0.925203;31.89215!4;47.143448;7.147226;6.346118;30.014718!5;50.759079;4.662631;33.419064;1.810736!6;44.579319;24.293139;0;21.779052!7;23.34252;34.675935;2.728696;29.904359!8;77.998747;5.563564;6.237357;0.851842!9;58.30186;0.864426;24.437907;7.047317!10;76.031374;1.836786;10.042352;2.740998!11;17.318536;10.906996;28.008987;34.416991!12;24.40405;16.339156;0.986844;48.92146!13;46.938051;21.03341;0.986844;21.693205!14;68.700895;0;14.677712;7.272903!15;0;3.593987;0.859481;86.198042!16;73.355963;0.899166;14.550641;1.84574!17;71.672612;5.434777;0;13.544121!18;77.099889;4.392148;9.159473;0 | |PWM=PO;A;C;G;T!1;35.413303;14.42905;14.719405;26.089752!2;84.290751;3.708783;2.651976;0!3;8.178523;49.655634;0.925203;31.89215!4;47.143448;7.147226;6.346118;30.014718!5;50.759079;4.662631;33.419064;1.810736!6;44.579319;24.293139;0;21.779052!7;23.34252;34.675935;2.728696;29.904359!8;77.998747;5.563564;6.237357;0.851842!9;58.30186;0.864426;24.437907;7.047317!10;76.031374;1.836786;10.042352;2.740998!11;17.318536;10.906996;28.008987;34.416991!12;24.40405;16.339156;0.986844;48.92146!13;46.938051;21.03341;0.986844;21.693205!14;68.700895;0;14.677712;7.272903!15;0;3.593987;0.859481;86.198042!16;73.355963;0.899166;14.550641;1.84574!17;71.672612;5.434777;0;13.544121!18;77.099889;4.392148;9.159473;0 | ||
|entrez_gene_id= | |entrez_gene_id=CDX1,2,4 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CDX1,2,4.p2 /HOCOMOCO:HXC6_f1 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:CDX1,2,4.p2 /HOCOMOCO:HXC6_f1 | ||
|name=known104 | |name=known104 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=CDX1,2,4.p2 | |representative_motif_id=CDX1,2,4.p2 | ||
|representative_motif_name= | |representative_motif_name=CDX1,2,4 | ||
|score=0.09679290326588724 | |score=0.09679290326588724 | ||
|uniprot_entry_name= | |uniprot_entry_name=CDX1,2,4 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known104
- db :SWISSREGULON
- Id :CDX1,2,4.p2
- name :CDX1,2,4
- score :0.09679290326588724
- External refs:
- Internal refs:
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Sub Motif Members
