NonredundantMotifs:129: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;65.556199;5.981981;23.729145;23.481068!2;73.467332;6.867307;34.388053;4.025701!3;40.147557;0.540887;77.54738;0.512569!4;0.320891;3.191648;11.025355;104.210499!5;50.881987;0.940498;48.999657;17.926251!6;30.813466;0.949641;86.830643;0.154643!7;28.974718;0.965593;0.460864;88.347218!8;15.196653;4.316124;58.616729;40.618887!9;6.185509;38.885829;32.432367;41.244688!10;2.905818;56.325217;1.7313;57.786058!11;3.372555;83.309837;2.784839;29.281162 | |PWM=PO;A;C;G;T!1;65.556199;5.981981;23.729145;23.481068!2;73.467332;6.867307;34.388053;4.025701!3;40.147557;0.540887;77.54738;0.512569!4;0.320891;3.191648;11.025355;104.210499!5;50.881987;0.940498;48.999657;17.926251!6;30.813466;0.949641;86.830643;0.154643!7;28.974718;0.965593;0.460864;88.347218!8;15.196653;4.316124;58.616729;40.618887!9;6.185509;38.885829;32.432367;41.244688!10;2.905818;56.325217;1.7313;57.786058!11;3.372555;83.309837;2.784839;29.281162 | ||
|entrez_gene_id= | |entrez_gene_id=EN1,2 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EN1,2. | |motif_cluster_2013_march_motif_members= /JASPAR:MA0027.1;En1 /SWISSREGULON:EN1,2.p2 | ||
|name=known129 | |name=known129 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=EN1,2.p2 | |representative_motif_id=EN1,2.p2 | ||
|representative_motif_name= | |representative_motif_name=EN1,2 | ||
|score=0.0732614741890113 | |score=0.0732614741890113 | ||
|uniprot_entry_name= | |uniprot_entry_name=EN1,2 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known129
- db :SWISSREGULON
- Id :EN1,2.p2
- name :EN1,2
- score :0.0732614741890113
- External refs:
- Internal refs:
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Sub Motif Members
