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NonredundantMotifs:15: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;812.0220965888938;337.92796193918946;419.51567969119344;213.10847329094975!2;1114.8485059362908;127.1410871122624;245.98066853689852;294.6039499247774!3;1127.7730815375821;103.1977571431449;319.6308311419565;231.97254168754546!4;1040.9761464165722;37.412577781325524;394.9808272207566;309.2046600915737!5;782.838815349718;200.3199728442578;666.9077608161709;132.50766250008104!6;1147.4644365133604;101.81288838674526;346.4188937536387;186.87799285648484!7;411.6340844182101;1.9781074042370632;1354.977692883163;13.984326804618343!8;906.3833167234949;2.3824932496579687;873.1904527395809;0.6179487974938186!9;1777.9730787976325;4.601132712599544;0.0;0.0!10;1778.466076288496;0.614425913308934;1.9692129151126248;1.5244963933138587!11;664.850272291718;612.2483335386709;504.8991301157549;0.5764755640830157!12;443.5764332446058;169.47194472656992;168.35041217087658;1001.1754213681763!13;304.8612633573023;86.76232167235445;1361.9646289810144;28.98599749955608!14;1586.9772640973506;43.972703871132055;123.33142904653405;28.292814495212987!15;1258.458106087965;34.891255917742114;487.5493768943859;1.6754726101381874!16;1577.5357267059856;90.21685079585978;113.58258644713297;1.2390475612520513
|PWM=P0;A;C;G;T!1;479.920749992811;260.0273121393316;843.6389468695144;441.9622386255029!2;558.865339350867;135.22195887767626;1286.6543463363323;44.80760306228799!3;1252.6009502289128;28.432614517833386;633.9442443922418;110.57143848817476!4;1953.4570399966146;20.178211690263286;38.91965019210983;12.994345748180013!5;1880.1534353640648;37.151855729891345;63.79554676802967;44.44840976518385!6;760.7638973200106;561.8374878092569;445.1034192237084;257.84444327418396!7;449.13201855593366;546.6245952260217;499.9862735898667;529.8063602553378!8;288.97406608243114;35.968630751195384;1672.2725383572617;28.33401243627553!9;1734.057075491703;36.7011033570548;235.52844784547085;19.262620932938944!10;1817.488522501428;131.11588648136788;58.266787194955654;18.67805144941647!11;1766.3102891995177;21.19944753497125;78.13510662889384;159.9044042637827!12;36.975780584252;1163.4998835296024;711.1811363079864;113.89244720532199!13;269.32454276986647;336.4547213259147;122.32996818435707;1297.4400153470235!14;468.4688225204327;282.31513554474253;902.2325394241883;372.53275013779637!15;1139.5406316895273;444.2733985148119;198.51850621061075;243.21671121221326
|entrez_gene_id=3662
|entrez_gene_id=6773
|motif_cluster_2013_march_motif_members= /JASPAR:MA0050.1;IRF1~MA0051.1;IRF2 /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq /UNIPROBE:Irf5_primary;SCI09~Irf6_primary;SCI09~Irf4_primary;SCI09~Irf3_primary;SCI09~Isgf3g_primary;SCI09 /HOCOMOCO:IRF2_f1~IRF4_si~PRDM1_f1~STAT2_f1~IRF7_f1~IRF3_f1~IRF1_si~IRF9_f1~IRF8_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF9_f1~IRF7_f1~STAT2_f1~IRF8_si~IRF4_si~IRF2_f1~IRF1_si~IRF3_f1~PRDM1_f1 /HOMER:IRF4_GM12878-IRF4-ChIP-Seq~SPI1_Bcell-PU.1-ChIP-Seq /JASPAR:MA0050.1;IRF1~MA0051.1;IRF2 /SWISSREGULON:IRF1,2,7.p3~PRDM1.p3 /UNIPROBE:Irf5_primary;SCI09~Irf6_primary;SCI09~Isgf3g_primary;SCI09~Irf4_primary;SCI09~Irf3_primary;SCI09
|name=known15
|name=non-redundant15
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=IRF4_si
|representative_motif_id=STAT2_f1
|representative_motif_name=  
|representative_motif_name=  
|score=1.488155978935132
|score=0.7282043527366836
|uniprot_entry_name=IRF4_HUMAN
|uniprot_entry_name=STAT2_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant15
  • db :HOCOMOCO
  • Id :STAT2_f1
  • name  :
  • score :0.7282043527366836
  • External refs:
EntrezGene:6773
UniProt:6773

  • Internal refs:
EntrezGene:6773


Motif matrix
P0ACGT
1479.920749992811260.0273121393316843.6389468695144441.9622386255029
2558.865339350867135.221958877676261286.654346336332344.80760306228799
31252.600950228912828.432614517833386633.9442443922418110.57143848817476
41953.457039996614620.17821169026328638.9196501921098312.994345748180013
51880.153435364064837.15185572989134563.7955467680296744.44840976518385
6760.7638973200106561.8374878092569445.1034192237084257.84444327418396
7449.13201855593366546.6245952260217499.9862735898667529.8063602553378
8288.9740660824311435.9686307511953841672.272538357261728.33401243627553
91734.05707549170336.7011033570548235.5284478454708519.262620932938944
101817.488522501428131.1158864813678858.26678719495565418.67805144941647
111766.310289199517721.1994475349712578.13510662889384159.9044042637827
1236.9757805842521163.4998835296024711.1811363079864113.89244720532199
13269.32454276986647336.4547213259147122.329968184357071297.4400153470235
14468.4688225204327282.31513554474253902.2325394241883372.53275013779637
151139.5406316895273444.2733985148119198.51850621061075243.21671121221326

Sub Motif Members

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