Personal tools

NonredundantMotifs:20: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.166568766856209;0.264627108388554;0.345569142484832;0.223234982270405!2;0.33559928597741;0.314450610927775;0.153335527947911;0.196614575146903!3;0.105350177962422;0.231838574306408;0.348017956536648;0.314793291194522!4;0.131273546627942;0.215623354635515;0.291288121053264;0.361814977683279!5;0.125569694828312;0.0723405433039333;0.404847922626842;0.397241839240913!6;0.0498787196364293;0.0391102710274104;0.325166661310853;0.585844348025307!7;0.705097892800264;0.009201616401007;0.284757379772287;0.000943111026442243!8;0.00353499698110437;0.986983062531775;0.0042753772905585;0.00520656319656203!9;0.00520656319656203;0.0042753772905585;0.986983062531775;0.00353499698110437!10;0.000943111026442243;0.284757379772287;0.009201616401007;0.705097892800264!11;0.585844348025307;0.325166661310853;0.0391102710274104;0.0498787196364293!12;0.397241839240913;0.404847922626842;0.0723405433039333;0.125569694828312!13;0.20685699747934;0.234554986714772;0.371730556802614;0.186857459003274!14;0.435956762345371;0.145114819741633;0.181032594493967;0.237895823419029!15;0.176103786632641;0.260126809366949;0.230769700644802;0.332999703355608!16;0.272101580475796;0.213365385159242;0.312031811553531;0.202501222811432!17;0.237402122772389;0.250981758957196;0.266976765334794;0.244639352935621
|PWM=P0;A;C;G;T!1;68.97234798731655;57.30914483367757;132.88076121246598;26.51473889732101!2;0.0;0.7896001522142723;0.6141334517222098;284.27325932684454!3;0.701866801968241;0.0;280.5884586165112;4.386667512301503!4;283.3959258243841;0.701866801968241;1.5792003044285416;0.0!5;0.0;251.7049192625467;19.145137476654476;14.826936191579087!6;5.17626766451577;2.017867055658692;274.885790850519;3.597067360087236!7;13.774135988626742;73.70994890060186;6.053601166976081;192.13930687457574!8;79.3933495435741;149.32543195451322;39.587008083979526;17.371203348713948!9;165.31750125139388;35.94607404876914;43.84207557091209;40.571342059705614
|entrez_gene_id=10691
|entrez_gene_id=1385
|motif_cluster_2013_march_motif_members= /JASPAR:MA0018.2;CREB1 /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /UNIPROBE:Jundm2_primary;SCI09~Gmeb1_primary;SCI09~Atf1_primary;SCI09 /HOCOMOCO:ATF3_f1~E4F1_f1~ATF2+ATF4_f1~ATF1_si~CREM_f1~CREB1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:CREB1_f1~E4F1_f1~CREM_f1~ATF2+ATF4_f1~ATF3_f1~ATF1_si /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /JASPAR:MA0018.2;CREB1 /SWISSREGULON:JUN.p2~ATF5_CREB3.p2~ATF4.p2~CREB1.p2 /UNIPROBE:Atf1_primary;SCI09~Jundm2_primary;SCI09~Gmeb1_primary;SCI09
|name=known20
|name=non-redundant20
|representative_motif_db=UNIPROBE
|representative_motif_db=HOCOMOCO
|representative_motif_id=Gmeb1_primary
|representative_motif_id=CREB1_f1
|representative_motif_name=SCI09
|representative_motif_name=  
|score=0.6275573267230993
|score=0.4550053399821507
|uniprot_entry_name=GMEB1_HUMAN
|uniprot_entry_name=CREB1_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant20
  • db :HOCOMOCO
  • Id :CREB1_f1
  • name  :
  • score :0.4550053399821507
  • External refs:
EntrezGene:1385
UniProt:1385

  • Internal refs:
EntrezGene:1385


Motif matrix
P0ACGT
168.9723479873165557.30914483367757132.8807612124659826.51473889732101
20.00.78960015221427230.6141334517222098284.27325932684454
30.7018668019682410.0280.58845861651124.386667512301503
4283.39592582438410.7018668019682411.57920030442854160.0
50.0251.704919262546719.14513747665447614.826936191579087
65.176267664515772.017867055658692274.8857908505193.597067360087236
713.77413598862674273.709948900601866.053601166976081192.13930687457574
879.3933495435741149.3254319545132239.58700808397952617.371203348713948
9165.3175012513938835.9460740487691443.8420755709120940.571342059705614

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:20&oldid=2578652"