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NonredundantMotifs:21: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;7.178680981595098;5.022239263803676;12.626533742331297;6.157208588957061!2;12.711656441717777;3.6319018404907886;9.647239263803666;4.993865030674838!3;6.809815950920249;0.9079754601226988;17.251533742331286;6.015337423312876!4;1.8159509202453976;0.9079754601226988;15.32208588957056;12.938650306748471!5;5.901840490797528;3.8588957055214848;18.27300613496932;2.9509202453987706!6;6.923312883435566;3.0644171779141085;20.996932515337424;0.0!7;0.0;0.0;30.9846625766871;0.0!8;0.0;4.085889570552149;26.898773006134952;0.0!9;2.8374233128834345;19.18098159509201;8.966257668711641;0.0!10;2.042944785276071;2.042944785276071;26.898773006134952;0.0!11;0.0;3.8588957055214848;22.358895705521444;4.766871165644174!12;13.733128834355814;0.0;15.32208588957056;1.9294478527607362!13;11.236196319018411;5.107361963190186;14.641104294478534;0.0!14;4.880368098159522;13.619631901840497;6.355828220858888;6.128834355828223!15;2.9509202453987706;6.355828220858888;6.4693251533742355;15.20858895705521!16;19.861963190184035;1.8159509202453976;7.263803680981577;2.042944785276071!17;16.343558282208566;4.766871165644174;5.788343558282212;4.085889570552149
|PWM=P0;A;C;G;T!1;412.42094645162337;313.572548752632;552.5283038649173;585.4530962704173!2;376.13240900122037;119.75790134565906;858.4765685302847;509.6080164624256!3;275.34930148375724;219.980961284091;1341.1068385437002;27.53779402804133!4;47.37175175588746;52.64447242892481;1752.3408659783993;11.617805176378402!5;215.9810760179416;1598.6619010391512;4.16217178052669;45.169746501969726!6;107.88234699938566;53.93640036691704;1657.431893863728;44.72425410955855!7;15.996358976076202;120.92572783147958;1712.030168642227;15.02263988980619!8;19.165719139229644;18.048806069684545;1807.4737316277906;19.28663850288406!9;1506.370335470995;5.874135402792257;348.004198812134;3.7262256536672367!10;1086.347379551729;97.17461913893277;669.1437540587203;11.30914259020784!11;484.1865887805356;318.3870486791885;967.685568959153;93.71568892071214!12;347.27723032704864;415.1352679568138;900.8457996548988;200.71659740082683
|entrez_gene_id=6668
|entrez_gene_id=1876
|motif_cluster_2013_march_motif_members= /JASPAR:MA0024.1;E2F1 /SWISSREGULON:E2F1..5.p2~TFDP1.p2 /HOMER:E2F7_Hela-E2F7-ChIP-Seq(GSE32673)~E2F1_Hela-E2F1-ChIP-Seq /UNIPROBE:Smad3_secondary;SCI09 /HOCOMOCO:E2F6_f1~E2F4_do~E2F2_f1~E2F7_f1~E2F1_f2~TFDP1_f1~E2F3_si~E2F5_do~SP2_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TFDP1_f1~E2F4_do~SP2_si~E2F2_f1~E2F7_f1~E2F1_f2~E2F3_si~E2F6_f1~E2F5_do /HOMER:E2F1_Hela-E2F1-ChIP-Seq~E2F7_Hela-E2F7-ChIP-Seq(GSE32673) /JASPAR:MA0024.1;E2F1 /SWISSREGULON:TFDP1.p2~E2F1..5.p2 /UNIPROBE:Smad3_secondary;SCI09
|name=known21
|name=non-redundant21
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=SP2_si
|representative_motif_id=E2F6_f1
|representative_motif_name=  
|representative_motif_name=  
|score=4.312902901611167
|score=4.311809455108847
|uniprot_entry_name=SP2_HUMAN
|uniprot_entry_name=E2F6_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant21
  • db :HOCOMOCO
  • Id :E2F6_f1
  • name  :
  • score :4.311809455108847
  • External refs:
EntrezGene:1876
UniProt:1876

  • Internal refs:
EntrezGene:1876


Motif matrix
P0ACGT
1412.42094645162337313.572548752632552.5283038649173585.4530962704173
2376.13240900122037119.75790134565906858.4765685302847509.6080164624256
3275.34930148375724219.9809612840911341.106838543700227.53779402804133
447.3717517558874652.644472428924811752.340865978399311.617805176378402
5215.98107601794161598.66190103915124.1621717805266945.169746501969726
6107.8823469993856653.936400366917041657.43189386372844.72425410955855
715.996358976076202120.925727831479581712.03016864222715.02263988980619
819.16571913922964418.0488060696845451807.473731627790619.28663850288406
91506.3703354709955.874135402792257348.0041988121343.7262256536672367
101086.34737955172997.17461913893277669.143754058720311.30914259020784
11484.1865887805356318.3870486791885967.68556895915393.71568892071214
12347.27723032704864415.1352679568138900.8457996548988200.71659740082683

Sub Motif Members

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