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NonredundantMotifs:27: Difference between revisions

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|PWM=PO;A;C;G;T!1;3324;801;1697;2790!2;844;43;6261;1464!3;17;9;8552;34!4;9;9;8310;284!5;3049;9;5356;198!6;5177;1188;1481;766!7;3057;620;138;4797!8;267;121;146;8078!9;9;1662;9;6932!10;9;7027;9;1567!11;17;8388;9;198!12;2248;5235;164;965
|PWM=PO;A;C;G;T!1;3324;801;1697;2790!2;844;43;6261;1464!3;17;9;8552;34!4;9;9;8310;284!5;3049;9;5356;198!6;5177;1188;1481;766!7;3057;620;138;4797!8;267;121;146;8078!9;9;1662;9;6932!10;9;7027;9;1567!11;17;8388;9;198!12;2248;5235;164;965
|entrez_gene_id=5970
|entrez_gene_id=5970
|motif_cluster_2013_march_motif_members= /JASPAR:MA0105.1;NFKB1~MA0101.1;REL~MA0061.1;NF-kappaB~MA0107.1;RELA /SWISSREGULON:NFKB1_REL_RELA.p2 /HOMER:RELA_GM12787-p65-ChIP-Seq~NFKB1_p50-ChIP-Chip /HOCOMOCO:REL_do~NFKB1_f1~NFKB2_f1~RELB_si~ZEP1_f1~TF65_f2
|motif_cluster_2013_march_motif_members= /HOCOMOCO:NFKB2_f1~ZEP1_f1~TF65_f2~RELB_si~NFKB1_f1~REL_do /HOMER:NFKB1_p50-ChIP-Chip~RELA_GM12787-p65-ChIP-Seq /JASPAR:MA0101.1;REL~MA0105.1;NFKB1~MA0061.1;NF-kappaB~MA0107.1;RELA /SWISSREGULON:NFKB1_REL_RELA.p2
|name=known27
|name=non-redundant27
|representative_motif_db=HOMER
|representative_motif_db=HOMER
|representative_motif_id=RELA_GM12787-p65-ChIP-Seq
|representative_motif_id=RELA_GM12787-p65-ChIP-Seq
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant27
  • db :HOMER
  • Id :RELA_GM12787-p65-ChIP-Seq
  • name  :
  • score :0.6841308706017131
  • External refs:
EntrezGene:5970
UniProt:5970

  • Internal refs:
EntrezGene:5970


Motif matrix
POACGT
1332480116972790
28444362611464
3179855234
4998310284
5304995356198
6517711881481766
730576201384797
82671211468078
99166296932
109702791567
111783889198
1222485235164965

Sub Motif Members