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NonredundantMotifs:42: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.233719878781548;0.0829031403115646;0.208991386273887;0.474385594633001!2;0.507651389943249;0.192839150319912;0.16565706977496;0.133852389961878!3;0.41685692164264;0.143747361001708;0.322291781490819;0.117103935864833!4;0.0293654411767698;0.184696894648939;0.0938567003019425;0.692080963872349!5;0.144572605818625;0.0537380728037711;0.658700752346673;0.142988569030931!6;0.867185627408322;0.0532209323358204;0.0329931815018921;0.0466002587539652!7;0.0428122143940767;0.0125982472327541;0.00626940577096154;0.938320132602208!8;0.338930030712191;0.0561801547352813;0.507869067382374;0.0970207471701534!9;0.938320132602208;0.00626940577096154;0.0125982472327541;0.0428122143940767!10;0.0466002587539652;0.0329931815018921;0.0532209323358204;0.867185627408322!11;0.142988569030931;0.658700752346673;0.0537380728037711;0.144572605818625!12;0.692080963872349;0.0938567003019425;0.184696894648939;0.0293654411767698!13;0.260491123697271;0.409201783908459;0.153408331673949;0.176898760720322!14;0.151407378097889;0.0655145127031483;0.123403953555388;0.659674155643575!15;0.492484444533162;0.127826187539521;0.190197894237489;0.189491473689828
|PWM=P0;A;C;G;T!1;0.173553910821485;0.244647010878487;0.248735494710349;0.333063583589678!2;0.317106561976575;0.259459487959638;0.118295437263868;0.305138512799919!3;0.240662422013045;0.181192078172451;0.247535043791699;0.330610456022805!4;0.431219460594741;0.156611422412954;0.14143976187804;0.270729355114265!5;0.95892528072766;0.011289722798393;0.0068819333328407;0.0229030631411059!6;0.049110505356461;0.0110650040306441;0.0128430981214808;0.926981392491414!7;0.0721299121616168;0.0131398227509503;0.00611517503470117;0.908615090052732!8;0.917455623783146;0.00388578046279708;0.0698604904232183;0.00879810533083873!9;0.00879810533083873;0.0698604904232183;0.00388578046279708;0.917455623783146!10;0.908615090052732;0.00611517503470117;0.0131398227509503;0.0721299121616168!11;0.926981392491414;0.0128430981214808;0.0110650040306441;0.049110505356461!12;0.0229030631411059;0.0068819333328407;0.011289722798393;0.95892528072766!13;0.422656110852828;0.136247615558468;0.266000819494699;0.175095454094004!14;0.336160531477187;0.121946469404951;0.177187958109979;0.364705041007882!15;0.247357321323532;0.0971533147963961;0.24892864037951;0.406560723500562!16;0.24636873790792;0.321670331426985;0.222124023554256;0.209836907110839
|entrez_gene_id=1523
|entrez_gene_id=6736
|motif_cluster_2013_march_motif_members= /UNIPROBE:Sox14_primary;SCI09~Sox30_secondary;SCI09~Tbp_primary;SCI09~Tcf7_secondary;SCI09~Sry_primary;SCI09~Cutl1_3494.2;CELL08~Sox21_primary;SCI09 /HOCOMOCO:ZN333_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN333_f1 /UNIPROBE:Tbp_primary;SCI09~Sox21_primary;SCI09~Sox30_secondary;SCI09~Sox14_primary;SCI09~Tcf7_secondary;SCI09~Sry_primary;SCI09~Cutl1_3494.2;CELL08
|name=known42
|name=non-redundant42
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Cutl1_3494.2
|representative_motif_id=Sry_primary
|representative_motif_name=CELL08
|representative_motif_name=SCI09
|score=0.049918069368157264
|score=0.042468679857074566
|uniprot_entry_name=CUX1_HUMAN
|uniprot_entry_name=SRY_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant42
  • db :UNIPROBE
  • Id :Sry_primary
  • name :SCI09
  • score :0.042468679857074566
  • External refs:
EntrezGene:6736
UniProt:6736

  • Internal refs:
EntrezGene:6736


Motif matrix
P0ACGT
10.1735539108214850.2446470108784870.2487354947103490.333063583589678
20.3171065619765750.2594594879596380.1182954372638680.305138512799919
30.2406624220130450.1811920781724510.2475350437916990.330610456022805
40.4312194605947410.1566114224129540.141439761878040.270729355114265
50.958925280727660.0112897227983930.00688193333284070.0229030631411059
60.0491105053564610.01106500403064410.01284309812148080.926981392491414
70.07212991216161680.01313982275095030.006115175034701170.908615090052732
80.9174556237831460.003885780462797080.06986049042321830.00879810533083873
90.008798105330838730.06986049042321830.003885780462797080.917455623783146
100.9086150900527320.006115175034701170.01313982275095030.0721299121616168
110.9269813924914140.01284309812148080.01106500403064410.049110505356461
120.02290306314110590.00688193333284070.0112897227983930.95892528072766
130.4226561108528280.1362476155584680.2660008194946990.175095454094004
140.3361605314771870.1219464694049510.1771879581099790.364705041007882
150.2473573213235320.09715331479639610.248928640379510.406560723500562
160.246368737907920.3216703314269850.2221240235542560.209836907110839

Sub Motif Members

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