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NonredundantMotifs:66: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.254479668696389;0.227469316696944;0.304515974410131;0.213535040196537!2;0.36645859001693;0.201140067016195;0.0957481010444648;0.33665324192241!3;0.440373158710397;0.0969468456466158;0.33514831723714;0.127531678405846!4;0.455634243977185;0.146688688883105;0.218234847450852;0.179442219688858!5;0.467078282347626;0.0884142789645963;0.140072329526068;0.30443510916171!6;0.010084322456452;0.851943241529712;0.0169294187349031;0.121043017278933!7;0.00602137704064227;0.00541222736872744;0.0329634494747109;0.955602946115919!8;0.701470573673509;0.00404744817933642;0.292080276087546;0.00240170205960837!9;0.0104487957312772;0.0015213311494839;0.985769101427864;0.00226077169137474!10;0.00361255716771864;0.00286509971524169;0.0123735203480181;0.981148822769022!11;0.110752756041425;0.00958413697711005;0.00277743593674692;0.876885671044718!12;0.937476564187191;0.0103710715438958;0.0214277758778942;0.0307245883910191!13;0.637452920785008;0.0580147587497441;0.103108228241329;0.201424092223919!14;0.130059650041209;0.441130471971358;0.135433155914032;0.2933767220734!15;0.333023547883078;0.128060518381811;0.26165337468331;0.277262559051802!16;0.253475830777991;0.111553947296041;0.200185358746814;0.434784863179154!17;0.0737246854371527;0.426972677778951;0.305816396751326;0.19348624003257
|PWM=P0;A;C;G;T!1;0.254479668696389;0.227469316696944;0.304515974410131;0.213535040196537!2;0.36645859001693;0.201140067016195;0.0957481010444648;0.33665324192241!3;0.440373158710397;0.0969468456466158;0.33514831723714;0.127531678405846!4;0.455634243977185;0.146688688883105;0.218234847450852;0.179442219688858!5;0.467078282347626;0.0884142789645963;0.140072329526068;0.30443510916171!6;0.010084322456452;0.851943241529712;0.0169294187349031;0.121043017278933!7;0.00602137704064227;0.00541222736872744;0.0329634494747109;0.955602946115919!8;0.701470573673509;0.00404744817933642;0.292080276087546;0.00240170205960837!9;0.0104487957312772;0.0015213311494839;0.985769101427864;0.00226077169137474!10;0.00361255716771864;0.00286509971524169;0.0123735203480181;0.981148822769022!11;0.110752756041425;0.00958413697711005;0.00277743593674692;0.876885671044718!12;0.937476564187191;0.0103710715438958;0.0214277758778942;0.0307245883910191!13;0.637452920785008;0.0580147587497441;0.103108228241329;0.201424092223919!14;0.130059650041209;0.441130471971358;0.135433155914032;0.2933767220734!15;0.333023547883078;0.128060518381811;0.26165337468331;0.277262559051802!16;0.253475830777991;0.111553947296041;0.200185358746814;0.434784863179154!17;0.0737246854371527;0.426972677778951;0.305816396751326;0.19348624003257
|entrez_gene_id=79618
|entrez_gene_id=79618
|motif_cluster_2013_march_motif_members= /UNIPROBE:Tcf1_2666.2;CELL08~Tcf1_primary;SCI09~Bbx_secondary;SCI09~Hmbox1_2674.1;CELL08~Tcf2_0913.2;CELL08
|motif_cluster_2013_march_motif_members= /UNIPROBE:Tcf1_2666.2;CELL08~Tcf1_primary;SCI09~Tcf2_0913.2;CELL08~Hmbox1_2674.1;CELL08~Bbx_secondary;SCI09
|name=known66
|name=non-redundant66
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Hmbox1_2674.1
|representative_motif_id=Hmbox1_2674.1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant66
  • db :UNIPROBE
  • Id :Hmbox1_2674.1
  • name :CELL08
  • score :0.04528859214187489
  • External refs:
EntrezGene:79618
UniProt:79618

  • Internal refs:
EntrezGene:79618


Motif matrix
P0ACGT
10.2544796686963890.2274693166969440.3045159744101310.213535040196537
20.366458590016930.2011400670161950.09574810104446480.33665324192241
30.4403731587103970.09694684564661580.335148317237140.127531678405846
40.4556342439771850.1466886888831050.2182348474508520.179442219688858
50.4670782823476260.08841427896459630.1400723295260680.30443510916171
60.0100843224564520.8519432415297120.01692941873490310.121043017278933
70.006021377040642270.005412227368727440.03296344947471090.955602946115919
80.7014705736735090.004047448179336420.2920802760875460.00240170205960837
90.01044879573127720.00152133114948390.9857691014278640.00226077169137474
100.003612557167718640.002865099715241690.01237352034801810.981148822769022
110.1107527560414250.009584136977110050.002777435936746920.876885671044718
120.9374765641871910.01037107154389580.02142777587789420.0307245883910191
130.6374529207850080.05801475874974410.1031082282413290.201424092223919
140.1300596500412090.4411304719713580.1354331559140320.2933767220734
150.3330235478830780.1280605183818110.261653374683310.277262559051802
160.2534758307779910.1115539472960410.2001853587468140.434784863179154
170.07372468543715270.4269726777789510.3058163967513260.19348624003257

Sub Motif Members

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