Personal tools

NonredundantMotifs:115: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;6.965290806754205;5.045966228893046;12.84709193245778;5.9127579737335685!2;3.343339587242025;4.457786116322679;22.412757973733555;0.5572232645403364!3;7.3058161350844095;0.0;20.24577861163223;3.2195121951219585!4;3.343339587242025;3.033771106941835;24.39399624765473;0.0!5;6.5628517823639525;5.324577861163233;12.69230769230766;6.191369606003755!6;8.667917448405227;0.0;17.64540337711066;4.457786116322679!7;6.748592870544067;6.5628517823639525;17.45966228893055;0.0!8;5.324577861163233;1.1144465290806729;24.332082551594713;0.0!9;0.0;1.6716697936210092;29.099437148217604;0.0!10;22.22701688555344;0.5572232645403364;4.891181988742956;3.095684803001862!11;0.0;0.5572232645403364;30.213883677298256;0.0!12;0.0;1.6097560975609733;27.056285178236347;2.105065666041274!13;7.986866791744818;3.033771106941835;19.750469043151938;0.0!14;15.354596622889275;0.0;12.444652908067528;2.971857410881796!15;6.748592870544067;0.8667917448405227;19.62664165103187;3.5290806754221387!16;0.0;2.2288930581613458;27.427767354596575;1.1144465290806729!17;4.488742964352704;4.736397748592866;20.15290806754219;1.393058161350841
|PWM=P0;A;C;G;T!1;6.965290806754205;5.045966228893046;12.84709193245778;5.9127579737335685!2;3.343339587242025;4.457786116322679;22.412757973733555;0.5572232645403364!3;7.3058161350844095;0.0;20.24577861163223;3.2195121951219585!4;3.343339587242025;3.033771106941835;24.39399624765473;0.0!5;6.5628517823639525;5.324577861163233;12.69230769230766;6.191369606003755!6;8.667917448405227;0.0;17.64540337711066;4.457786116322679!7;6.748592870544067;6.5628517823639525;17.45966228893055;0.0!8;5.324577861163233;1.1144465290806729;24.332082551594713;0.0!9;0.0;1.6716697936210092;29.099437148217604;0.0!10;22.22701688555344;0.5572232645403364;4.891181988742956;3.095684803001862!11;0.0;0.5572232645403364;30.213883677298256;0.0!12;0.0;1.6097560975609733;27.056285178236347;2.105065666041274!13;7.986866791744818;3.033771106941835;19.750469043151938;0.0!14;15.354596622889275;0.0;12.444652908067528;2.971857410881796!15;6.748592870544067;0.8667917448405227;19.62664165103187;3.5290806754221387!16;0.0;2.2288930581613458;27.427767354596575;1.1144465290806729!17;4.488742964352704;4.736397748592866;20.15290806754219;1.393058161350841
|entrez_gene_id=4150
|entrez_gene_id=4150
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GTF2I.p2 /HOCOMOCO:MAZ_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MAZ_f1 /SWISSREGULON:GTF2I.p2
|name=known115
|name=non-redundant115
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=MAZ_f1
|representative_motif_id=MAZ_f1
Line 12: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant115
  • db :HOCOMOCO
  • Id :MAZ_f1
  • name  :
  • score :4.35692695345147
  • External refs:
EntrezGene:4150
UniProt:4150

  • Internal refs:
EntrezGene:4150


Motif matrix
P0ACGT
16.9652908067542055.04596622889304612.847091932457785.9127579737335685
23.3433395872420254.45778611632267922.4127579737335550.5572232645403364
37.30581613508440950.020.245778611632233.2195121951219585
43.3433395872420253.03377110694183524.393996247654730.0
56.56285178236395255.32457786116323312.692307692307666.191369606003755
68.6679174484052270.017.645403377110664.457786116322679
76.7485928705440676.562851782363952517.459662288930550.0
85.3245778611632331.114446529080672924.3320825515947130.0
90.01.671669793621009229.0994371482176040.0
1022.227016885553440.55722326454033644.8911819887429563.095684803001862
110.00.557223264540336430.2138836772982560.0
120.01.609756097560973327.0562851782363472.105065666041274
137.9868667917448183.03377110694183519.7504690431519380.0
1415.3545966228892750.012.4446529080675282.971857410881796
156.7485928705440670.866791744840522719.626641651031873.5290806754221387
160.02.228893058161345827.4277673545965751.1144465290806729
174.4887429643527044.73639774859286620.152908067542191.393058161350841

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:115&oldid=2578747"