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NonredundantMotifs:144: Difference between revisions

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|entrez_gene_id=6665
|entrez_gene_id=6665
|motif_cluster_2013_march_motif_members= /UNIPROBE:Sox15_secondary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Sox15_secondary;SCI09
|name=known144
|name=non-redundant144
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Sox15_secondary
|representative_motif_id=Sox15_secondary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant144
  • db :UNIPROBE
  • Id :Sox15_secondary
  • name :SCI09
  • score :0.01748330691453406
  • External refs:
EntrezGene:6665
UniProt:6665

  • Internal refs:
EntrezGene:6665


Motif matrix
P0ACGT
10.110714236541320.2524966542209460.2915107324672070.345278376770526
20.1646220274579580.1840623512585090.1901969217872310.461118699496302
30.2873501994828420.1998738657913450.3303615441584910.182414390567322
40.6166929893834950.089218098864980.1661320568308010.127956854920724
50.5257167500588890.2582342958272050.05974417114111410.156304782972791
60.08327398217955650.09641082587443880.07680495615516360.743510235790841
70.04951208561321030.09681480817889610.6918401043310320.161833001876862
80.4104785820391830.1214695926108490.1561683852028030.311883440147165
90.5227148640022620.3081708092745030.07007344347294570.0990408832502902
100.7082001869036610.0508183115484910.1383464021436550.102635099404193
110.0950921851382270.05614409756808160.1586639886088850.690099728684807
120.1264190686605940.1456158033362170.08022421973050510.647740908272683
130.1671785019857660.4241869465843010.1545924930256790.254042058404254
140.2221213971014010.3180652258998190.3779201978088790.0818931791899011
150.5327203780442880.1683202013035730.2571883065684870.0417711140836523

Sub Motif Members