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Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant208
  • db :UNIPROBE
  • Id :Atf1_secondary
  • name :SCI09
  • score :0.0583472460647591
  • External refs:
EntrezGene:466
UniProt:466

  • Internal refs:
EntrezGene:466


Motif matrix
P0ACGT
10.190871099612340.2085898465533430.4181109865294970.18242806730482
20.3178460457066550.11166899610180.2863055867621040.28417937142944
30.6489576087143690.1107073240537620.2033070274344180.0370280397974514
40.03693113599585210.05188410128862460.04651118907574940.864673573639774
50.08383141981479130.04714032924204580.8073735048288360.0616547461143271
60.8255372831012910.04081352716795180.06550169710623350.0681474926245234
70.03622933469778870.8603388847434810.04903180852806310.0543999720306671
80.1586669985710680.02658213652197470.7823815175974130.0323693473095441
90.5645839623296190.2339806206601210.08378978224083930.117645634769421
100.398928610413860.02084126577981490.3492860513699930.230944072436332
110.01835672159190350.2592857637906380.2083534004710360.514004114146423
120.6916398778187510.06871079947669410.09939364211480.140255680589755
130.4559482012631950.1063024660305730.1807319227122790.257017409993953
140.2577187766794610.3002440150641660.2045203490610190.237516859195354

Sub Motif Members