NonredundantMotifs:15: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=3662
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PRDM1.p3~IRF1,2,7.p3 /HOMER:SPI1_Bcell-PU.1-ChIP-Seq~IRF4_GM12878-IRF4-ChIP-Seq ...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;479.920749992811;260.0273121393316;843.6389468695144;441.9622386255029!2;558.865339350867;135.22195887767626;1286.6543463363323;44.80760306228799!3;1252.6009502289128;28.432614517833386;633.9442443922418;110.57143848817476!4;1953.4570399966146;20.178211690263286;38.91965019210983;12.994345748180013!5;1880.1534353640648;37.151855729891345;63.79554676802967;44.44840976518385!6;760.7638973200106;561.8374878092569;445.1034192237084;257.84444327418396!7;449.13201855593366;546.6245952260217;499.9862735898667;529.8063602553378!8;288.97406608243114;35.968630751195384;1672.2725383572617;28.33401243627553!9;1734.057075491703;36.7011033570548;235.52844784547085;19.262620932938944!10;1817.488522501428;131.11588648136788;58.266787194955654;18.67805144941647!11;1766.3102891995177;21.19944753497125;78.13510662889384;159.9044042637827!12;36.975780584252;1163.4998835296024;711.1811363079864;113.89244720532199!13;269.32454276986647;336.4547213259147;122.32996818435707;1297.4400153470235!14;468.4688225204327;282.31513554474253;902.2325394241883;372.53275013779637!15;1139.5406316895273;444.2733985148119;198.51850621061075;243.21671121221326 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=6773 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF9_f1~IRF7_f1~STAT2_f1~IRF8_si~IRF4_si~IRF2_f1~IRF1_si~IRF3_f1~PRDM1_f1 /HOMER:IRF4_GM12878-IRF4-ChIP-Seq~SPI1_Bcell-PU.1-ChIP-Seq /JASPAR:MA0050.1;IRF1~MA0051.1;IRF2 /SWISSREGULON:IRF1,2,7.p3~PRDM1.p3 /UNIPROBE:Irf5_primary;SCI09~Irf6_primary;SCI09~Isgf3g_primary;SCI09~Irf4_primary;SCI09~Irf3_primary;SCI09 | ||
|name=non-redundant15 | |||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=STAT2_f1 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score= | |score=0.7282043527366836 | ||
|uniprot_entry_name= | |uniprot_entry_name=STAT2_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant15
- db :HOCOMOCO
- Id :STAT2_f1
- name :
- score :0.7282043527366836
- External refs:
- Internal refs:
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Sub Motif Members
