NonredundantMotifs:21: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif21 to NonredundantMotifs:21 without leaving a redirect: NSchange) |
||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;412.42094645162337;313.572548752632;552.5283038649173;585.4530962704173!2;376.13240900122037;119.75790134565906;858.4765685302847;509.6080164624256!3;275.34930148375724;219.980961284091;1341.1068385437002;27.53779402804133!4;47.37175175588746;52.64447242892481;1752.3408659783993;11.617805176378402!5;215.9810760179416;1598.6619010391512;4.16217178052669;45.169746501969726!6;107.88234699938566;53.93640036691704;1657.431893863728;44.72425410955855!7;15.996358976076202;120.92572783147958;1712.030168642227;15.02263988980619!8;19.165719139229644;18.048806069684545;1807.4737316277906;19.28663850288406!9;1506.370335470995;5.874135402792257;348.004198812134;3.7262256536672367!10;1086.347379551729;97.17461913893277;669.1437540587203;11.30914259020784!11;484.1865887805356;318.3870486791885;967.685568959153;93.71568892071214!12;347.27723032704864;415.1352679568138;900.8457996548988;200.71659740082683 | ||
|motif_cluster_2013_march_motif_members= | |entrez_gene_id=1876 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:TFDP1_f1~E2F4_do~SP2_si~E2F2_f1~E2F7_f1~E2F1_f2~E2F3_si~E2F6_f1~E2F5_do /HOMER:E2F1_Hela-E2F1-ChIP-Seq~E2F7_Hela-E2F7-ChIP-Seq(GSE32673) /JASPAR:MA0024.1;E2F1 /SWISSREGULON:TFDP1.p2~E2F1..5.p2 /UNIPROBE:Smad3_secondary;SCI09 | ||
|name=non-redundant21 | |||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=E2F6_f1 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=4. | |score=4.311809455108847 | ||
|uniprot_entry_name= | |uniprot_entry_name=E2F6_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant21
- db :HOCOMOCO
- Id :E2F6_f1
- name :
- score :4.311809455108847
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
