NonredundantMotifs:24: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif24 to NonredundantMotifs:24 without leaving a redirect: NSchange) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;40.467066178768256;24.7332241345442;22.42384074067384;39.60849109769958!2;26.09851549555037;78.17706205290655;7.2894687497971535;15.667575853431968!3;126.46296958552556;0.7696525661604446;0.0;0.0!4;0.0;3.8474114400240524;121.16219566036528;2.2230150512966396!5;0.7696525661604446;0.0;126.46296958552556;0.0!6;1.5388794369318033;0.0;0.0;125.69374271475426!7;18.04194835192721;1.4537881805252826;106.9672330530731;0.7696525661604446 | |PWM=P0;A;C;G;T!1;40.467066178768256;24.7332241345442;22.42384074067384;39.60849109769958!2;26.09851549555037;78.17706205290655;7.2894687497971535;15.667575853431968!3;126.46296958552556;0.7696525661604446;0.0;0.0!4;0.0;3.8474114400240524;121.16219566036528;2.2230150512966396!5;0.7696525661604446;0.0;126.46296958552556;0.0!6;1.5388794369318033;0.0;0.0;125.69374271475426!7;18.04194835192721;1.4537881805252826;106.9672330530731;0.7696525661604446 | ||
|entrez_gene_id=6935 | |entrez_gene_id=6935 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:TBX2_f1~TBX3_f1~ZEB1_do~TBX5_si /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq /JASPAR:MA0009.1;T~MA0103.1;ZEB1 /SWISSREGULON:TBX4,5.p2~T.p2~EOMES.p2 /UNIPROBE:Six4_2860.1;CELL08~Eomes_primary;SCI09~Eomes_secondary;SCI09 | ||
|name= | |name=non-redundant24 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=ZEB1_do | |representative_motif_id=ZEB1_do | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant24
- db :HOCOMOCO
- Id :ZEB1_do
- name :
- score :0.7911637297312275
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
